View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_high_28 (Length: 263)
Name: NF15720_high_28
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 15664205 - 15664442
Alignment:
| Q |
9 |
atattagaggaaacatttcccttgttttattctataagtacgactcaaatggtaaaaggctgcataaatatttgatatatttacacgcagctttgaattc |
108 |
Q |
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| T |
15664205 |
atattagaggaaacatttcccttgttttattctataagtacgactcaaatggtaaaaggctgcataaatatttgatatatttacacgcagctttgaattc |
15664304 |
T |
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| Q |
109 |
gtagttgctcacttctcatcactaagaatgtggtagactctttaaaaacaaagtaagaagagaaaatatcttatacaaattttgaaaagtactcacctta |
208 |
Q |
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| T |
15664305 |
gtagttgctcacttctcatcactaagaatgtggtagactctttaaaaacaaagtaagaagagaaaatatcttatacaaattttgaaaagtactcacc--a |
15664402 |
T |
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| Q |
209 |
ccaaaaagaaaatagatatttgaagtcggacctaaaatct |
248 |
Q |
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| T |
15664403 |
ccaaaaaaaaaatagatatttgaagtcggacctaaaatct |
15664442 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 28739480 - 28739435
Alignment:
| Q |
42 |
ataagtacgactcaaatggtaaaaggctgcataaatatttgatata |
87 |
Q |
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| T |
28739480 |
ataactacgactcaaatggtaaaatgatgcatgaatatttgatata |
28739435 |
T |
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