View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_high_31 (Length: 256)

Name: NF15720_high_31
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_high_31
NF15720_high_31
[»] chr5 (5 HSPs)
chr5 (1-246)||(40898391-40898636)
chr5 (102-146)||(39030569-39030613)
chr5 (101-147)||(34252722-34252768)
chr5 (105-150)||(42324943-42324988)
chr5 (105-161)||(26730117-26730173)
[»] chr2 (8 HSPs)
chr2 (101-147)||(10459271-10459317)
chr2 (102-147)||(31469076-31469121)
chr2 (103-147)||(33829394-33829438)
chr2 (101-147)||(17437185-17437231)
chr2 (102-140)||(35693930-35693968)
chr2 (101-146)||(2884262-2884307)
chr2 (101-154)||(16180494-16180547)
chr2 (101-161)||(7932734-7932794)
[»] chr8 (2 HSPs)
chr8 (101-146)||(9548108-9548153)
chr8 (101-150)||(29111018-29111067)
[»] chr1 (4 HSPs)
chr1 (101-146)||(47543605-47543650)
chr1 (102-146)||(3739874-3739918)
chr1 (105-147)||(35310315-35310357)
chr1 (103-147)||(3739819-3739863)
[»] scaffold0093 (1 HSPs)
scaffold0093 (108-156)||(21594-21642)
[»] chr7 (2 HSPs)
chr7 (101-152)||(44816467-44816518)
chr7 (102-142)||(16866461-16866501)
[»] chr4 (5 HSPs)
chr4 (101-146)||(30848651-30848696)
chr4 (102-147)||(55827301-55827346)
chr4 (106-150)||(23151594-23151638)
chr4 (106-150)||(24980689-24980733)
chr4 (101-145)||(54235281-54235325)
[»] chr3 (1 HSPs)
chr3 (105-146)||(46829105-46829146)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 40898636 - 40898391
Alignment:
Q  1 agaatgatcacacttgtgtagaatgctcaggacatcctggatgaattcaatcacatccttatctgctaaccataacgttactccaaaacatcgttttttc 100  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40898636 agaatgatcacacttgtgtagaatgccagggacatcctggatgaattcaatcacatccttatctgctaatcataacgttactccaaaacatcgttttttc 40898537  T
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttgagatggagaaaatatgaacttaacttatgcttaacacattttagtagattgtg 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40898536 gaaccaaatacaataatttttattgaccaatttttgattatattttgagatggagaaagtatgaacttaacttatgcttaacacattttagtagattgtg 40898437  T
Q  201 atgtgaataaggtatagctcttatcattaccaactcctgtcctatg 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40898436 atgtgaataaggtatagctcttatcattaccaactcctgtcctatg 40898391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 39030613 - 39030569
Alignment:
Q  102 aaccaaatacaataatttttgttgaccaatttttgattatatttt 146  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||    
T  39030613 aaccaaatacattaacttttgttgaccaatttttgcttatatttt 39030569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 34252768 - 34252722
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    |||||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  34252768 gaaccaaatacattaacttttgttgaccaatttttgcttacattttg 34252722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 42324943 - 42324988
Alignment:
Q  105 caaatacaataatttttgttgaccaatttttgattatattttgaga 150  Q
    |||||||| ||| ||||||||||||||||||  |||||||||||||    
T  42324943 caaatacattaacttttgttgaccaatttttacttatattttgaga 42324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 26730117 - 26730173
Alignment:
Q  105 caaatacaataatttttgttgaccaatttttgattatattttgagatggagaaaata 161  Q
    |||||||| ||| ||||||| ||||||||||   |||||||| ||||||||||||||    
T  26730117 caaatacattaacttttgttaaccaatttttatctatattttaagatggagaaaata 26730173  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 10459317 - 10459271
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  10459317 gaaccaaatacattaacttttgttgaccaatttttgcttatattttg 10459271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 31469121 - 31469076
Alignment:
Q  102 aaccaaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  31469121 aaccaaatacattaacttttgttgaccaatttttgcttatattttg 31469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 33829438 - 33829394
Alignment:
Q  103 accaaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||    
T  33829438 accaaatatattaatttttgttgaccaatttttgtttatattttg 33829394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 17437185 - 17437231
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    |||| ||||||| |||||||||||||| |||||||| ||||||||||    
T  17437185 gaactaaatacattaatttttgttgacaaatttttgtttatattttg 17437231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 35693968 - 35693930
Alignment:
Q  102 aaccaaatacaataatttttgttgaccaatttttgatta 140  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  35693968 aaccaaatacattaatttttattgaccaatttttgatta 35693930  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 2884307 - 2884262
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 146  Q
    |||||||||||| |||||||||||||| |||||||  |||||||||    
T  2884307 gaaccaaatacattaatttttgttgacaaatttttacttatatttt 2884262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 16180494 - 16180547
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttgagatgga 154  Q
    |||||||||||| ||| ||||||||||||| ||||  |||||||||| ||||||    
T  16180494 gaaccaaatacattaacttttgttgaccaaattttacttatattttgggatgga 16180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 7932794 - 7932734
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttgagatggagaaaata 161  Q
    |||||||||||  ||| |||||||||| |||||||| ||||||||| ||| | ||||||||    
T  7932794 gaaccaaatacgttaacttttgttgactaatttttgcttatattttaagacgaagaaaata 7932734  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 9548108 - 9548153
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 146  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  9548108 gaaccaaatataataatttttgttgaacaatttttgtttatatttt 9548153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 29111018 - 29111067
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttgaga 150  Q
    |||||||||||| ||| ||| ||||| ||||||||| |||||||||||||    
T  29111018 gaaccaaatacattaagtttcgttgatcaatttttgtttatattttgaga 29111067  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 47543650 - 47543605
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 146  Q
    ||||||||| || |||||||||||||||||||||| ||||||||||    
T  47543650 gaaccaaattcattaatttttgttgaccaattttttattatatttt 47543605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 3739874 - 3739918
Alignment:
Q  102 aaccaaatacaataatttttgttgaccaatttttgattatatttt 146  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||    
T  3739874 aaccaaatacattaacttttgttgaccaatttttgcttatatttt 3739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 35310315 - 35310357
Alignment:
Q  105 caaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    |||||||| ||||||||||||||||||||||  ||||||||||    
T  35310315 caaatacattaatttttgttgaccaatttttacttatattttg 35310357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 3739863 - 3739819
Alignment:
Q  103 accaaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    |||||||||| ||| ||| ||||||||||||||| ||||||||||    
T  3739863 accaaatacattaactttcgttgaccaatttttgcttatattttg 3739819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 21594 - 21642
Alignment:
Q  108 atacaataatttttgttgaccaatttttgattatattttgagatggaga 156  Q
    ||||| |||||||||||||||| |||||| ||||||||| |||||||||    
T  21594 atacattaatttttgttgaccactttttgtttatattttaagatggaga 21642  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 44816518 - 44816467
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattttgagatg 152  Q
    |||||||||||| ||| |||||||| |||||||||| ||| |||||||||||    
T  44816518 gaaccaaatacattaacttttgttggccaatttttgtttacattttgagatg 44816467  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 16866461 - 16866501
Alignment:
Q  102 aaccaaatacaataatttttgttgaccaatttttgattata 142  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  16866461 aaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 30848651 - 30848696
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 146  Q
    |||| ||||||| ||||||||||||||||||||||| ||| |||||    
T  30848651 gaacaaaatacattaatttttgttgaccaatttttgcttacatttt 30848696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 55827301 - 55827346
Alignment:
Q  102 aaccaaatacaataatttttgttgaccaatttttgattatattttg 147  Q
    ||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  55827301 aaccaaatatattaacttttgttgaccaatttttgcttatattttg 55827346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 23151594 - 23151638
Alignment:
Q  106 aaatacaataatttttgttgaccaatttttgattatattttgaga 150  Q
    ||||||| ||||||||||||| ||||||||  |||||||||||||    
T  23151594 aaatacattaatttttgttgatcaatttttctttatattttgaga 23151638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 24980689 - 24980733
Alignment:
Q  106 aaatacaataatttttgttgaccaatttttgattatattttgaga 150  Q
    ||||||| |||||||||||||| |||||||| ||| |||||||||    
T  24980689 aaatacattaatttttgttgacaaatttttgcttacattttgaga 24980733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 54235281 - 54235325
Alignment:
Q  101 gaaccaaatacaataatttttgttgaccaatttttgattatattt 145  Q
    |||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  54235281 gaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 46829105 - 46829146
Alignment:
Q  105 caaatacaataatttttgttgaccaatttttgattatatttt 146  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  46829105 caaatacattaacttttgttgaccaatttttgcttatatttt 46829146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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