View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_high_35 (Length: 246)
Name: NF15720_high_35
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 40841690 - 40841907
Alignment:
| Q |
16 |
aaacattccgtatctaatatactgattagcatgaataccaagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccact |
115 |
Q |
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| T |
40841690 |
aaacattccgtatctaatacactgattagcatgaataccaagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccact |
40841789 |
T |
|
| Q |
116 |
gatattattatttcttctttaagcttcttatcatatacaaaccaattggactgaactcttcaaattgcttgttgaacaattttagcttttctttcaatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841790 |
gatattattatttcttctttaagcttcttatcatatacaaaccaattggactgaactcttcaaattgcttgttgaacaattttagcttttctttcaatat |
40841889 |
T |
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| Q |
216 |
atcttctgcaacatcacc |
233 |
Q |
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|||||||||||||||||| |
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| T |
40841890 |
atcttctgcaacatcacc |
40841907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 31474120 - 31474344
Alignment:
| Q |
16 |
aaacattccgtatctaatatactgattagcatgaataccaagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccact |
115 |
Q |
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|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31474120 |
aaacattccatatctaatatactgatttgcatgaataccaagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttcccact |
31474219 |
T |
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| Q |
116 |
gatattattatttcttctttaagcttcttatcatatacaaaccaattggactgaa----------ctcttcaaattgcttgttgaacaattttagctttt |
205 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31474220 |
gatattattatttcttccttaagcttcttatcatatacaaaccaattggactgaactctgtacatctcttcaaattgcttgttgaacaattttagctttt |
31474319 |
T |
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| Q |
206 |
ctttcaatatatcttctgcaacatc |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
31474320 |
ctttcaatatatcttctgcaacatc |
31474344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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