View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_high_42 (Length: 209)
Name: NF15720_high_42
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 4863594 - 4863386
Alignment:
| Q |
1 |
atgaaatctaagagagagtgtgaagaatctaagaaaaat---------gatgaataatacaaagtgttgttttgtttgtggagtactagannnnnnnnn- |
90 |
Q |
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| T |
4863594 |
atgaaatctaagagagagtgtgaagaatctaagaaaaatatgtaaaatgatgaataatacaaagtgttgttttgtttgtggagaaatagatttttttttt |
4863495 |
T |
|
| Q |
91 |
ggacaagtttggtttcgataattacgatgcaaacatcaatgtcatcataataaagtgttaactaactttgtaacaacaataaaaacctcagtcactgttt |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863494 |
ggacaagtttggtttcgataattacgatgcaaacatcaatgtcatcataataaagtgttaactaactttgtaacaacaataaaaacctcagtcactgttt |
4863395 |
T |
|
| Q |
191 |
ttgcatttt |
199 |
Q |
| |
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||||||||| |
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| T |
4863394 |
ttgcatttt |
4863386 |
T |
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