View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_high_7 (Length: 494)
Name: NF15720_high_7
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 10749922 - 10750224
Alignment:
| Q |
22 |
tcaaccgctgttattcaatttcaatcactcattcataattctccagacaaaggtaaaaatatcaacatgcatgcataacctgttattacacattcctcat |
121 |
Q |
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| T |
10749922 |
tcaaccgctgttattcaatttcaatcactcattcataattctccagacaaaggtaaaaatatcaacatgcatgcataacctgttattacacattcctcat |
10750021 |
T |
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| Q |
122 |
ttcaatcnnnnnnnctttcttgttattattattctcatataatctgcannnnnnnctttcttgtattactttttcacaattctacattctcatataataa |
221 |
Q |
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| T |
10750022 |
ttcaatctttttttctttcttgttattattatcctcatataatctgcatttttttctttcttgtattactttttcacaattctacattctcatataataa |
10750121 |
T |
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| Q |
222 |
cgaggtttgttttcaagattcattcacatgcatggcattgttttggcttgttctgaattggtctttcttttggtttcaaaaatatctgcatctgcatgca |
321 |
Q |
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| T |
10750122 |
cgaggtttgttttcaagattcattcacatgcgtgacattgttttggcttgttctgaattggtctttcttttggtttcaaaaatatctgcatctgcatgca |
10750221 |
T |
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| Q |
322 |
aca |
324 |
Q |
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||| |
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| T |
10750222 |
aca |
10750224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 10750259 - 10750376
Alignment:
| Q |
359 |
aatgaaattgcaatggcatgaagttaacaacattgaatgtatcgctgtaaatttgaataaaaattcaatcattttcacattacaagtccctatactattc |
458 |
Q |
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| T |
10750259 |
aatgaaattgcaatggcatgaagttaacaacattgaatgtatcgctacaaatttgaataaaaatccaatctttttcacattacaagtccctatactattc |
10750358 |
T |
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| Q |
459 |
tggggcaagctgattctg |
476 |
Q |
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| T |
10750359 |
tgggtcaagctgattctg |
10750376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 23272374 - 23272233
Alignment:
| Q |
177 |
ctttcttgtattactttttcacaattctacattctcatataataacgaggtttgttttcaagattcattcacatgcatggcattgttttggcttgttctg |
276 |
Q |
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| T |
23272374 |
ctttcttgtattactttttcacaat-ctacattctcatataataatgaggtttgttttcaagattcacacacatgtgtgacattgttttggcttgttctg |
23272276 |
T |
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| Q |
277 |
aattggtctttcttttggtttcaaaaatatctgcatctgcatg |
319 |
Q |
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| T |
23272275 |
aattggtctttcttttggtttcaaaaatatatgcatttgcatg |
23272233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 23272462 - 23272382
Alignment:
| Q |
48 |
actcattcataattctccagacaaaggtaaaaatatcaacatgcatgcataacctgttattacacattcctcatttcaatc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23272462 |
actcattcataattctccagacaaaggtaaaaatatcaacatgcattcataacctgttattacacattcctcatttcaatc |
23272382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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