View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_low_1 (Length: 824)

Name: NF15720_low_1
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_low_1
NF15720_low_1
[»] chr1 (11 HSPs)
chr1 (1-431)||(6516685-6517115)
chr1 (599-811)||(6516289-6516501)
chr1 (1-246)||(6521920-6522165)
chr1 (1-258)||(6512459-6512716)
chr1 (1-279)||(6506525-6506809)
chr1 (631-786)||(6498599-6498751)
chr1 (427-511)||(6516582-6516666)
chr1 (633-774)||(6505438-6505576)
chr1 (662-770)||(6511794-6511902)
chr1 (454-505)||(6505685-6505736)
chr1 (67-108)||(47759914-47759955)
[»] scaffold0341 (5 HSPs)
scaffold0341 (1-279)||(550-834)
scaffold0341 (1-279)||(8203-8487)
scaffold0341 (633-774)||(7116-7254)
scaffold0341 (662-770)||(13473-13581)
scaffold0341 (454-505)||(7364-7415)


Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 6517115 - 6516685
Alignment:
Q  1 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517115 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct 6517016  T
Q  101 gatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggtgctagagttgttagaccca 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6517015 gatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagtgctagagttgttagaccca 6516916  T
Q  201 gttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcaccgacgtcagtcccatcactcgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516915 gttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcaccgacgtcagtcccatcactcgc 6516816  T
Q  301 agctcctcctccatttgcaaataacactaactcctatccaggtcctcataaacttatcaatagacctatagaaagttttatttattaatttcatcttggc 400  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6516815 agctcctcctccatttgcaaataacactacctcctatccaggtcttcataaacttatcaatagacctatagaaagttttatttattaatttcatcttggt 6516716  T
Q  401 cctcagcttattaaaatgaatcttggtgtta 431  Q
    ||||| |||||||||||||||||||||||||    
T  6516715 cctcaacttattaaaatgaatcttggtgtta 6516685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 599 - 811
Target Start/End: Complemental strand, 6516501 - 6516289
Alignment:
Q  599 gtacatatgaaatgtccccacggagnnnnnnngtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctct 698  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516501 gtacatatgaaatgtccccacggagtttttttgtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctct 6516402  T
Q  699 tgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattgcaccttattgta 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516401 tgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattgcaccttattgta 6516302  T
Q  799 tccttgtctctgc 811  Q
    |||||||||||||    
T  6516301 tccttgtctctgc 6516289  T

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Target: chr1; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 6521920 - 6522165
Alignment:
Q  1 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||    
T  6521920 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacct 6522019  T
Q  101 gatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggtgctagagttgttagaccca 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||  |||  ||||||||||| ||| | ||||||||| ||||||||||||    
T  6522020 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagaccca 6522119  T
Q  201 gttgttatttgagatatgaaaccgattcactcttttatcaaccaac 246  Q
    ||||| ||||||||||||||||| ||||| |||| |||||||||||    
T  6522120 gttgtaatttgagatatgaaaccaattcattcttctatcaaccaac 6522165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 6512716 - 6512459
Alignment:
Q  1 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct 100  Q
    |||| ||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| | |||||||||||||    
T  6512716 agcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacct 6512617  T
Q  101 gatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggtgctagagttgttagaccca 200  Q
    |||||||||||| |||| || ||||||||||||||  |||||||||| | |||| ||| |||||||||||||||| ||||||||||| |||||||||| |    
T  6512616 gatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggtgctagaattgttagaccaa 6512517  T
Q  201 gttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcacc 258  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||    
T  6512516 gttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatccacc 6512459  T

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Target: chr1; HSP #5
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 6506809 - 6506525
Alignment:
Q  1 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||| | |||||||||||||    
T  6506809 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 6506710  T
Q  101 gatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgtta 194  Q
    ||||||||| ||||||| |||||||| ||||||| | |||||||||| |||||| |||  |||||| |||| |      | || |||| |||| || |||    
T  6506709 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 6506610  T
Q  195 gacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcacc 279  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||| ||| |||||||||||||| || | |||| |||||||    
T  6506609 gacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatcacc 6506525  T

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Target: chr1; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 631 - 786
Target Start/End: Complemental strand, 6498751 - 6498599
Alignment:
Q  631 gtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatct 730  Q
    ||||||||||||||||||||||||   ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  6498751 gtttgtgcaggaaaaagcaacaat---ggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatct 6498655  T
Q  731 atttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattg 786  Q
    |||| | | |||||||||||||||||| |||||||||| |||||| ||||||||||    
T  6498654 atttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattg 6498599  T

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Target: chr1; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 427 - 511
Target Start/End: Complemental strand, 6516666 - 6516582
Alignment:
Q  427 tgttaaaaaataatttccgtgtcttagtatccttgatacattaaatttcctcttattaagtgtagttatttaatttgaaaaacaa 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516666 tgttaaaaaataatttccgtgtcttagtatccttgatacattaaatttcctcttattaagtgtagttatttaatttgaaaaacaa 6516582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 633 - 774
Target Start/End: Complemental strand, 6505576 - 6505438
Alignment:
Q  633 ttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctat 732  Q
    |||||||||||||||||||||     || ||||||| || |||||| |||| |||||||||||| |||||| |||||||||||||||||| |||||||||    
T  6505576 ttgtgcaggaaaaagcaacaaca---gtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctat 6505480  T
Q  733 ttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaa 774  Q
    || | | |||| ||||||||||||| || |||||||||||||    
T  6505479 ttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa 6505438  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 662 - 770
Target Start/End: Complemental strand, 6511902 - 6511794
Alignment:
Q  662 ctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtt 761  Q
    |||| |||||||| ||| |||||||||||||||||||||||  |||||||||||||||||| ||||| ||| | | ||| ||| ||||| | ||||||||    
T  6511902 ctactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatataagagtgagggagccagataaaaggtt 6511803  T
Q  762 tgaaggtaa 770  Q
    |||||||||    
T  6511802 tgaaggtaa 6511794  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 6505736 - 6505685
Alignment:
Q  454 tatccttgatacattaaatttcctcttattaagtgtagttatttaatttgaa 505  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||| ||||||    
T  6505736 tatccttgatacattaaattttctcttagtgagtatagttatttattttgaa 6505685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
Q  67 tcaaaccatatatggtctagctcaatgcacacctgatttgtc 108  Q
    |||||||||||||||||| | ||| |||||||||||||||||    
T  47759955 tcaaaccatatatggtcttgttcagtgcacacctgatttgtc 47759914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 130; Significance: 6e-67; HSPs: 5)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 834 - 550
Alignment:
Q  1 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||| | |||||||||||||    
T  834 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 735  T
Q  101 gatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgtta 194  Q
    ||||||||| ||||||| |||||||| ||||||| | |||||||||| |||||| |||  |||||| |||| |      | || |||| |||| || |||    
T  734 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 635  T
Q  195 gacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcacc 279  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||| ||| |||||||||||||| || | |||| |||||||    
T  634 gacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatcacc 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 8487 - 8203
Alignment:
Q  1 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||| | |||||||||||||    
T  8487 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 8388  T
Q  101 gatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgtta 194  Q
    ||||||||| ||||||| |||||||| ||||||| | |||||||||| |||||| |||  |||||| |||| |      | || |||| |||| || |||    
T  8387 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 8288  T
Q  195 gacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcacc 279  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||| ||| |||||||||||||| || | |||| |||||||    
T  8287 gacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatcacc 8203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 633 - 774
Target Start/End: Complemental strand, 7254 - 7116
Alignment:
Q  633 ttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctat 732  Q
    |||||||||||||||||||||     || ||||||| || |||||| |||| |||||||||||| |||||| |||||||||||||||||| |||||||||    
T  7254 ttgtgcaggaaaaagcaacaaca---gtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctat 7158  T
Q  733 ttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaa 774  Q
    || | | |||| ||||||||||||| || |||||||||||||    
T  7157 ttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa 7116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 662 - 770
Target Start/End: Complemental strand, 13581 - 13473
Alignment:
Q  662 ctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtt 761  Q
    |||| |||||||| ||| |||||||||||||||||||||||  |||||||||||||||||| ||||| ||| | | ||| ||| ||||| | ||||||||    
T  13581 ctactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatataagagtgagggagccagataaaaggtt 13482  T
Q  762 tgaaggtaa 770  Q
    |||||||||    
T  13481 tgaaggtaa 13473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 7415 - 7364
Alignment:
Q  454 tatccttgatacattaaatttcctcttattaagtgtagttatttaatttgaa 505  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||| ||||||    
T  7415 tatccttgatacattaaattttctcttagtgagtatagttatttattttgaa 7364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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