View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_10 (Length: 482)
Name: NF15720_low_10
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 10311868 - 10312323
Alignment:
| Q |
9 |
aagcaaaggacaaaagggaattgattctagaaagaacttgaatcatgaacaatataaggcttttgctaatataggcaatatggacaatacacattttgtt |
108 |
Q |
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| T |
10311868 |
aagcaaaggacaaaagggaattgattctagaaagaacttgaatcatgaacaatataaggcttttgctaatataggcaatatggataatacacattttgtt |
10311967 |
T |
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| Q |
109 |
agcagtaaaatccaaagttcttctgctacatctagttatcctcaattgttaggagagaaaacagtgaagggaaagggaattcttcataatgtgatgtctg |
208 |
Q |
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| T |
10311968 |
agcagtaaaatgcaaagttcttctgctacatctagttatcctcaattgttaggagagaaaacagtgaagggaaagggaattcttcataatgtgatgtctg |
10312067 |
T |
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| Q |
209 |
gcgcagaatgttttaacgatggactcaacttaagagcgtggatgaagtctgaaagtcataaagtgaagaaatcagaaaggctgtatatatttaaacagat |
308 |
Q |
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| T |
10312068 |
gcgcagaatgttttaacgatggactcaacttaagagcgtggatgaagtctgaaagtcataaagtgaagaaatcagaaaggctgtatatatttaaacagat |
10312167 |
T |
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| Q |
309 |
tttggaattggttgattttgcacactctcaaggatttgtcttggaagacataaaaccatcttgtttcgtcttatcgcctttgaataaaattaaatacatt |
408 |
Q |
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| T |
10312168 |
tttggaattggttgattttgcacactctcaaggatttgtcttggaagacataaaaccatcttgtttcgtcttatcgcctttgaataaaattaaatacatt |
10312267 |
T |
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| Q |
409 |
ggttcatatagccaacatgtgtttgatgaccaaaaatcatgtttcaccgtatttaa |
464 |
Q |
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| T |
10312268 |
ggttcatatagccaacatgtgtttgatgaccaaaaatcatgtttcaccgtatttaa |
10312323 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 440446 - 440376
Alignment:
| Q |
45 |
cttgaatcatgaacaatataaggcttttgctaatataggcaatatggacaatacacattttgttagcagta |
115 |
Q |
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| T |
440446 |
cttgaatcaagaaccacataaagcttttgctaatatcagaaatatagacaatacacatcttgttagcagta |
440376 |
T |
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