View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_11 (Length: 480)
Name: NF15720_low_11
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_11 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 47508783 - 47508333
Alignment:
| Q |
18 |
gattagaataagaattataaattgctagaattgatacgacaatgaaataaagatatgcaaaattataagaacaaaattaaagtataatactaagaagaca |
117 |
Q |
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| T |
47508783 |
gattagaataagaattataaattgctagaattgatacgacaatgaaataaagatatgcaaaattataagaacaaaattaaagtataatactaagaagaca |
47508684 |
T |
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| Q |
118 |
atgaaggtaaaaa-tggataagacaaaaatagagggggatgtcgccacactcaagcttctagagagaagatgaatgataagcctttgaggaatgattgtc |
216 |
Q |
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| T |
47508683 |
atgaaggtaaaaaatggataagacaaaaatagagggggatgtcgccacactcaagcttctagagagaagatgaatgataaacctttgaggaatgattgtc |
47508584 |
T |
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| Q |
217 |
acnnnnnnnncttgagattattgataagatgaaaagaaatgatccaatccaaaattgaagagacataatctcaaaaatacattttcgaccaaaatattca |
316 |
Q |
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| T |
47508583 |
acaaaaaaa-cttgagattattgataagatgaaaagaaatgatccaatccaaaattgaagagacataatctcacaaatacattttcgaccaaaatattca |
47508485 |
T |
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| Q |
317 |
ctgcccttcatcggtttaggcgttgcctacttatagcaaaggaataagccttgctggcttacattacaagagaagaaaagataatccatttaattaggaa |
416 |
Q |
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| T |
47508484 |
ctgcccttcattggtttaggcgttgcctacttatagcaaaggaataagccttgttggcttacattacaagagaagaaaagataatccatttaattaggaa |
47508385 |
T |
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| Q |
417 |
tattcttttcttgcataagaagtattatttctcataatcaagttttgtcttc |
468 |
Q |
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| T |
47508384 |
tattcttttcttgcataagaagtattatttcttataatcaagttttgtcttc |
47508333 |
T |
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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 40062980 - 40063063
Alignment:
| Q |
129 |
aatggataagacaaaaatagagggggatgtcgccacactcaagcttctagagagaagatgaatgataagcctttgaggaatgat |
212 |
Q |
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| T |
40062980 |
aatggaaaagacaaaaatagagggggatggcaccacactaaagcttctggagagaagatgaacgatgagtcttggaggaatgat |
40063063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40062897 - 40062961
Alignment:
| Q |
18 |
gattagaataagaattataaattgctagaattgatacgacaatgaaataaagatatgcaaaatta |
82 |
Q |
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| T |
40062897 |
gattagaacaagaattataaattgctaaaattgatgtgataatgaaaaagagacatgcaaaatta |
40062961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 442
Target Start/End: Complemental strand, 448 - 409
Alignment:
| Q |
403 |
catttaattaggaatattcttttcttgcataagaagtatt |
442 |
Q |
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| T |
448 |
catttaattaggaatatttctttcttgcataagaagtatt |
409 |
T |
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