View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_13 (Length: 463)
Name: NF15720_low_13
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 438469 - 438037
Alignment:
| Q |
13 |
atactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgt |
112 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438469 |
atactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgt |
438370 |
T |
|
| Q |
113 |
tggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
438369 |
tggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcatt |
438270 |
T |
|
| Q |
213 |
accaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatataca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438269 |
accaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatataca |
438170 |
T |
|
| Q |
313 |
actcggctaatgaaaaatgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438169 |
actcggctaatgaaaaatgtacaagtttgattctccttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaaga |
438070 |
T |
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| Q |
413 |
tataaacttgaatgtgatgcaaagtgcaccttg |
445 |
Q |
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| T |
438069 |
tataaacttgaatgtgatgcaaagtgcaccttg |
438037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 445
Target Start/End: Original strand, 28608435 - 28608867
Alignment:
| Q |
13 |
atactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgt |
112 |
Q |
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|||||||||| || | ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| ||||||||||||||| |||| |
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| T |
28608435 |
atactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgt |
28608534 |
T |
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| Q |
113 |
tggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacatt |
212 |
Q |
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|||||||| |||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
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| T |
28608535 |
tggacgtgatggtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagtatt |
28608634 |
T |
|
| Q |
213 |
accaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatataca |
312 |
Q |
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|||| ||||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||| | |||||||||||||||||||| ||||||| |
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| T |
28608635 |
gataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcacgaagacatataca |
28608734 |
T |
|
| Q |
313 |
actcggctaatgaaaaatgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaaga |
412 |
Q |
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| | | ||| |||||| |||||| |||||||||||||||||||| |||||||||||| | ||||||||| | ||||||||| || ||| | |||||| |
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| T |
28608735 |
atttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaaga |
28608834 |
T |
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| Q |
413 |
tataaacttgaatgtgatgcaaagtgcaccttg |
445 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28608835 |
tataaacttgaatgtgatgcaaagtgcaccttg |
28608867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 29 - 445
Target Start/End: Original strand, 13652322 - 13652738
Alignment:
| Q |
29 |
aggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcc |
128 |
Q |
| |
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||||||||| | ||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||| ||||| |
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| T |
13652322 |
aggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgca |
13652421 |
T |
|
| Q |
129 |
cttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaag |
228 |
Q |
| |
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||||||||| |||||||||| || |||||| ||| ||||| ||||||||||||| |||||| ||||| ||||| ||||| ||||| ||||||| |
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| T |
13652422 |
cttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaag |
13652521 |
T |
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| Q |
229 |
cattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaaa |
328 |
Q |
| |
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|||| |||||| || |||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| || ||||| || || ||||||||||| |
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| T |
13652522 |
catttggagaggcgtacgatgctgttagagtccgaaccttaaatgttgtgtcatcctatgcaaccattcacgaggacatatataattcagctaatgaaaa |
13652621 |
T |
|
| Q |
329 |
atgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtg |
428 |
Q |
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| T |
13652622 |
acacacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaacctgaatgtg |
13652721 |
T |
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| Q |
429 |
atgcaaagtgcaccttg |
445 |
Q |
| |
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||||||| ||||||||| |
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| T |
13652722 |
atgcaaactgcaccttg |
13652738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 28 - 445
Target Start/End: Original strand, 13659821 - 13660238
Alignment:
| Q |
28 |
caggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgc |
127 |
Q |
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|||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| || |||||| |||||| |
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| T |
13659821 |
caggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaactcaaaggacgtactggtgc |
13659920 |
T |
|
| Q |
128 |
ccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaa |
227 |
Q |
| |
|
|||||||| |||||||||| || ||||| |||| ||||| | |||||||||||| |||||| ||||| ||||| ||||| ||||| |||||| |
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| T |
13659921 |
acttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagcattaataatacatttgaa |
13660020 |
T |
|
| Q |
228 |
gcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaa |
327 |
Q |
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||| | |||||||||||||||| | |||||| |||| |||||||||||||| |||| |||||||||| || || ||||| ||||| |||||||||| |
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| T |
13660021 |
gcacttggagaggcatatgatgctgtcagagtcgaaaccttaaatgttgtgtcatcctattcaaccattcatgaggacatatataactctgctaatgaaa |
13660120 |
T |
|
| Q |
328 |
aatgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgt |
427 |
Q |
| |
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|| | ||||| ||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||| |
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| T |
13660121 |
aacgcacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgt |
13660220 |
T |
|
| Q |
428 |
gatgcaaagtgcaccttg |
445 |
Q |
| |
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|||||||| | ||||||| |
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| T |
13660221 |
gatgcaaacttcaccttg |
13660238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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