View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15720_low_14 (Length: 437)
Name: NF15720_low_14
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 24274087 - 24273669
Alignment:
| Q |
1 |
gataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaattacacttgataattgtagaaaaatatgtatagctccaccttcat |
100 |
Q |
| |
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||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||| |||||||| | | ||||| |||||||||||||||||||| |
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| T |
24274087 |
gataacgtagtaccttgtaaaaagtacaaagtactctgcttcacacctttcagaatcacacttga--acccttgaaaa-tatgtatagctccaccttcac |
24273991 |
T |
|
| Q |
101 |
ttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattcaatgtacataatttacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||| |
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| T |
24273990 |
ttttaaaactaaaccccttcttgtccagaagactcaaagatataatattattcgttacgtgtggaacatgtctaacattgtttaatgtacataatttacc |
24273891 |
T |
|
| Q |
201 |
atcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattgaattgctcataggttgaa |
298 |
Q |
| |
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|||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24273890 |
atcatgagaactaatcttgatagagctcatcccaaccattttgcaaacataactattggctataacaatattaccaccattgaattgctcataggttgaa |
24273791 |
T |
|
| Q |
299 |
agtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcct |
398 |
Q |
| |
|
|| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24273790 |
agccattctctcgtaggacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcct |
24273691 |
T |
|
| Q |
399 |
cttcagaatgtgtaccatcctc |
420 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
24273690 |
cttcagaatgtgtaccatcctc |
24273669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 84 - 410
Target Start/End: Complemental strand, 30047574 - 30047246
Alignment:
| Q |
84 |
tatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattc |
183 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||| ||| |
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| T |
30047574 |
tataactccaccttcacctttgaaactaaacctcttcttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacatgtctaacttctttc |
30047475 |
T |
|
| Q |
184 |
aatgtacataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattga |
281 |
Q |
| |
|
| |||||| |||||||||||| |||| |||||||| ||||| | | ||||||| ||||| ||| |||||| ||||||| ||||||| ||||||| | |
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|
| T |
30047474 |
agtgtacaaaatttaccatcatgagtcctaatcttcatagatcacatcccaaccaccttgcagacagaactatgggccatatcaatatttccaccatcca |
30047375 |
T |
|
| Q |
282 |
attgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaac |
381 |
Q |
| |
|
| |||||||||| ||||| |||| |||| || ||||||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||| || |||| |
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| T |
30047374 |
actgctcataggatgaaaaccattatctcctaggacaaatatgataagacgctccggaatctagaacccacatatcggtataatgtgtgtgaccatcaac |
30047275 |
T |
|
| Q |
382 |
aactaaggtgatatcctcttcagaatgtg |
410 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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|
| T |
30047274 |
aactaaggtgatatcctcttcggaatgtg |
30047246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 89 - 373
Target Start/End: Original strand, 13417654 - 13417940
Alignment:
| Q |
89 |
ctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattcaatgt |
188 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||||||||| || | ||| |
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|
| T |
13417654 |
ctccaccttcacttttgaaactaaaccccttcttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacaggtctaacttcgttaagtgt |
13417753 |
T |
|
| Q |
189 |
acataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccattgaattgc |
286 |
Q |
| |
|
||| |||||||||| | |||| ||||| |||||||||| | ||||||| |||| |||||||||||||||||||||||||| | ||||| |||| | |
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|
| T |
13417754 |
acaaaatttaccattatgagtcctaattttgatagagcccatcccaaccaccttgctgacataactattggccataacaatattgcaaccatctaatttc |
13417853 |
T |
|
| Q |
287 |
tcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
373 |
Q |
| |
|
||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||| | |||||||||||||| |
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|
| T |
13417854 |
tcataggatgaaaacaattctctcctaggacaaatatgataagacgcttcggaatctagaacccatacattagtgtaatgtgtgtga |
13417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 81 - 353
Target Start/End: Complemental strand, 28706366 - 28706092
Alignment:
| Q |
81 |
atgtatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaacttta |
180 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||| | ||| ||||| |||||||||||||||||||||| |
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|
| T |
28706366 |
atgtataactccagcttcacctttgaaactaaaccccttcttgtccaaaagactcaaaaatatcagattcttcgtcatgtgtggaacatgtctaacttcg |
28706267 |
T |
|
| Q |
181 |
ttcaatgtacataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccat |
278 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||||||||||| | | ||||||| ||| | | |||||||||||||||||||||| ||||||| |
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|
| T |
28706266 |
ttcggtgtacataatttaccatcatgagtcgtaatcttgatagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccat |
28706167 |
T |
|
| Q |
279 |
tgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccaca |
353 |
Q |
| |
|
|||| |||||||||||||| |||||||||| || |||||||||||||||| ||| |||||||||||| |||| |
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|
| T |
28706166 |
ccaatttctcataggttgaaaatcattctctcctaggacaaatatgataagatgctccggaatctagaacgcaca |
28706092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 13417573 - 13417622
Alignment:
| Q |
7 |
gtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
56 |
Q |
| |
|
|||||||||||||||||||| | ||||| | | ||||||||||||||||| |
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|
| T |
13417573 |
gtagtaccttgtagaaagtagagagtacatcgtttcacacctttcaaaat |
13417622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 152 - 420
Target Start/End: Original strand, 53471323 - 53471590
Alignment:
| Q |
152 |
tcgttatgtgtggaacatgtctaactttattcaatgtacataatttaccatcacgagtactaatcttgatagagctc-tccaaccattttgcaaacataa |
250 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| | ||| | || | | || || |
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|
| T |
53471323 |
tcgtcatgtgtggaacaagtctaactttgttcaatgtacataatttaccatcacgagtcctaatcttaatagagcacatcccaacaacct--aggcagaa |
53471420 |
T |
|
| Q |
251 |
ctattggccataacaatattaccaccattgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaaccc |
350 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||||||||| ||| ||||||| | || |||||||||||||||| ||| |||||| ||||||| |
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|
| T |
53471421 |
ctagcggccataacaatattgccaccatccaattgctcataggttaaaaaccattctcccctaggacaaatatgataagatgctccggaatccagaaccc |
53471520 |
T |
|
| Q |
351 |
acacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcctc |
420 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
53471521 |
acacatcagtgtaatgtgtgtggccatcaacaactaaggcgatatcctcttcggaatgtgtaccatcctc |
53471590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 81 - 420
Target Start/End: Original strand, 9009102 - 9009447
Alignment:
| Q |
81 |
atgtatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaa----catgtctaac |
176 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||| ||||| ||||||||||||||||| |||||| | ||| || | ||||||| || |||||||||| |
|
|
| T |
9009102 |
atgtataactccatcttcacctttcaaactgaaccctgtcttgtccaaaagactcggagatatcagattcttggacatgtgtgaaacatgcatgtctaac |
9009201 |
T |
|
| Q |
177 |
tttattcaatgtacataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattacca |
274 |
Q |
| |
|
|| |||| ||||||||||||||||||| |||| |||||||||||||||| | |||||||| ||||||||| |||| |||| |||| ||||||| ||| |
|
|
| T |
9009202 |
ttcgttcagtgtacataatttaccatcatgagtcctaatcttgatagagcccatcccaaccatcttgcaaacagaactgttggtcatagcaatattgcca |
9009301 |
T |
|
| Q |
275 |
ccattgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaa |
374 |
Q |
| |
|
|||| || | |||||| | ||||| |||||||||| || ||| |||||||||||| ||| ||||| | |||||||||||| |||||||||||||| |
|
|
| T |
9009302 |
ccatccaactactcatatgatgaaaatcattctctcctaggacgaatatgataagattctccagaatccaaaacccacacatcggtgtaatgtgtgtgac |
9009401 |
T |
|
| Q |
375 |
caacaacaactaaggtgatatcctcttcagaatgtgtaccatcctc |
420 |
Q |
| |
|
| |||||||||||| |||| ||| ||| ||||||||| ||||||| |
|
|
| T |
9009402 |
cttcaacaactaaggcgataaccttttcggaatgtgtatcatcctc |
9009447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 53471261 - 53471311
Alignment:
| Q |
6 |
cgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
56 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
53471261 |
cgtagtaccttgtagaaagtacagagtacccctcttcacacctttcaaaat |
53471311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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