View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_16 (Length: 431)
Name: NF15720_low_16
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 3 - 418
Target Start/End: Complemental strand, 45000413 - 44999998
Alignment:
| Q |
3 |
cataggtttgaaactccaaaatgggaaaatgcttcgttggggccacggcagattctgctacaacaatcaaagtaataacatcaaatggtggaatcatgga |
102 |
Q |
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| T |
45000413 |
cataggtttgaaactccaacatgggaaactgcttcgttggggccatggcagattctgatacaacaatcaaagtaataacatcaaatggtggaatcatgga |
45000314 |
T |
|
| Q |
103 |
attcagtgcaccaataacagtaagtttcatcaccaaagagttctctggacatgccatattcagaagtcatgatctcgtttggaaaccactaatccaaatc |
202 |
Q |
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| T |
45000313 |
attcagtgcaccaataacagtaagtttcatcaccaaagagttccctggacatgccatattcagaagccatgatctcttttggaaaccactaagccaattc |
45000214 |
T |
|
| Q |
203 |
gatgagttagaggcaggacaatcatactatttgcttccaatcaacaacaacaaaatagaagctacatgtggtagtgattatgaacatgttgtaagacaag |
302 |
Q |
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| T |
45000213 |
gatgagttagaggcaggacaatcatactatttgcttccaatcaacaacaacaaaatagaagctacatgtggtagtgattatgaacatgttgtaagacaag |
45000114 |
T |
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| Q |
303 |
gacatgttaggtctcatagtgttccaacaacctcgtaccctgctccatatagaatgtccttagattaccaacaccaccaaggaatgaggtttctcaagaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45000113 |
gacatgttaggtctcatagtgttccaacaacctcgtaccctgctccatatagaatgtccttagattaccaacaccaccaaggaatgaggtttctcaagaa |
45000014 |
T |
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| Q |
403 |
gtcttctatagaatct |
418 |
Q |
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| T |
45000013 |
gtcttctatagaatct |
44999998 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 18245448 - 18245484
Alignment:
| Q |
297 |
gacaaggacatgttaggtctcatagtgttccaacaac |
333 |
Q |
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| T |
18245448 |
gacaaggacatgttaggtctcaaagtgttcctacaac |
18245484 |
T |
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