View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_17 (Length: 411)
Name: NF15720_low_17
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_17 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 28017 - 28395
Alignment:
| Q |
18 |
cttccacccactgtatcacacctgtcgaattgaggaacaatcttttattgttatactgttcgttacgaattactgatctgttccgtttttcaggtgaact |
117 |
Q |
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| T |
28017 |
cttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttatactgttcgttacgaattactgatctgttccgtttttcaggtgaact |
28116 |
T |
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| Q |
118 |
gaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctcaaagctgatgtcgtccaattgatcatgctttccgtgctct |
217 |
Q |
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| T |
28117 |
gaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctcaaagctgatgtcgtccaattgatcatgctttccgtgctct |
28216 |
T |
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| Q |
218 |
tcgctctcccaatgaatttcacttcggtttaagatgatgaaacggttgtccattgtcttaaaagtgaaatccccactgcttgggtcatcagcacctttcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28217 |
tcgctctcccaatgaatttcacttcggtttaagatgatgaaacggttgtccattgtcttaaaagtgaaatccccactgcttgggtcatcagcacctttcc |
28316 |
T |
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| Q |
318 |
aactagtcagactcaaattcttatccatattcattccaagtaggaatgtgtcagttggattttcaaagctctcccacag |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28317 |
aactagtcagactcaaattcttatccatattcattccaagtaggaatgtgtcagttggattttcaaagctctcccacag |
28395 |
T |
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