View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_18 (Length: 372)
Name: NF15720_low_18
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 17844674 - 17845013
Alignment:
| Q |
13 |
catcatcaagtggtgacattgccgtctactggggccaaaacctaggagatggcaacttgacatcaacatgtgacacaggtaattacgagattgtactctt |
112 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17844674 |
catcatcaagtggtggcattgccgtctactggggccaaaacctaggagatggcaacttgacatcaacatgtgacacaggtaattacgagattgtactctt |
17844773 |
T |
|
| Q |
113 |
agctttcctcaatgtctttggaggaggaatagtcccaaattggaactttgcaggccattgtggtgactggagcccttgtacaaaactcgaacccgaaata |
212 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17844774 |
agctttcctcaatgtctttggaggaggaagagtcccaaattggaactttgcaggccattgtggtgactggagcccttgtacaaaactcgaacccgaaata |
17844873 |
T |
|
| Q |
213 |
aaacactgtcaacaaaaagggatcaaagttttactttcgatcggaggtgcatctggatcctactcccttagctcaccagacgatgctaaaaatgttgctg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17844874 |
aaacactgtcaacaaaaagggatcaaagttttactttcgatcggaggtgcatctggatcctactcccttagctcaccagacgatgctaaaaatgttgctg |
17844973 |
T |
|
| Q |
313 |
attacctctatactaactttcttagtggtcaatttggtcc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17844974 |
attacctctatactaactttcttagtggtcaatttggtcc |
17845013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 17885026 - 17885365
Alignment:
| Q |
13 |
catcatcaagtggtgacattgccgtctactggggccaaaacctaggagatggcaacttgacatcaacatgtgacacaggtaattacgagattgtactctt |
112 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17885026 |
catcttcaagtggtggcattgccatctactggggccaaaacctaggagatggcaccttgacatcaacatgtgacactggtaattacgagattgtactctt |
17885125 |
T |
|
| Q |
113 |
agctttcctcaatgtctttggaggaggaatagtcccaaattggaactttgcaggccattgtggtgactggagcccttgtacaaaactcgaacccgaaata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17885126 |
agctttcctcaatgtctttggaggaggaagagtcccaagttggaactttgcaggtcattgtggtgactggagcccttgcacaaaactcgaacccgaaata |
17885225 |
T |
|
| Q |
213 |
aaacactgtcaacaaaaagggatcaaagttttactttcgatcggaggtgcatctggatcctactcccttagctcaccagacgatgctaaaaatgttgctg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17885226 |
aaacactgtcaacaaaaagggatcaaagttttactttcccttggaggtgcatctggatcctactcccttagctcaccagacgatgctaaaaatgttgctg |
17885325 |
T |
|
| Q |
313 |
attacctctatactaactttcttagtggtcaatttggtcc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17885326 |
attacctctatactaactttcttagtggtcaatttggtcc |
17885365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 17861520 - 17861188
Alignment:
| Q |
13 |
catcatcaagtggtgacattgccgtctactggggccaaaacctaggagatggcaacttgacatcaacatgtgacacaggtaattacgagattgtactctt |
112 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17861520 |
catcttcaagtggtggcattgccatctactggggccaaaacctaggagatggcaccttgacatcaacatgtgacacaggtaattacgagattgtactctt |
17861421 |
T |
|
| Q |
113 |
agctttcctcaatgtctttggaggaggaatagtcccaaattggaactttgcaggccattgtggtgactggagcccttgtacaaaactcgaacccgaaata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
17861420 |
agctttcctcaatgtctttggaggaggaagagtcccaagttggaactttgcaggtcattgtggtgactggagcccttgcacaaaactcgaacccgaaata |
17861321 |
T |
|
| Q |
213 |
aaacactgtcaacaaaaagggatcaaagttttactttcgatcggaggtgcatctggatcctactcccttagctcaccagacgatgctaaaaatgttgctg |
312 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| | ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
17861320 |
aaacattgtcaacaaaaaggtgtcaaagttttactttcccttggaggtgcaattggatcttactcccttagctcaccagaggatgctaaaaatgttgctg |
17861221 |
T |
|
| Q |
313 |
attacctctatactaactttcttagtggtcaat |
345 |
Q |
| |
|
|||| || || |||| || ||||||||||||| |
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|
| T |
17861220 |
attatctaaatgctaagttccttagtggtcaat |
17861188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 352
Target Start/End: Original strand, 17904440 - 17904762
Alignment:
| Q |
30 |
attgccgtctactggggccaaaacctaggagatggcaacttgacatcaacatgtgacacaggtaattacgagattgtactcttagctttcctcaatgtct |
129 |
Q |
| |
|
|||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
17904440 |
attgccatctactggggacaaaacttagaagatggcaacttgacatcaacatgtgacactggtaatttcaagattgtactcttagctttcctcaatgtct |
17904539 |
T |
|
| Q |
130 |
ttggaggaggaatagtcccaaattggaactttgcaggccattgtggtgactggagcccttgtacaaaactcgaacccgaaataaaacactgtcaacaaaa |
229 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17904540 |
ttggaggaggaagagtcccaagttggaactttgcaggtcattgtggtgactggagcccttgtacaaaactcgaacccgaaataaaacactgtcaacaaaa |
17904639 |
T |
|
| Q |
230 |
agggatcaaagttttactttcgatcggaggtgcatctggatcctactcccttagctcaccagacgatgctaaaaatgttgctgattacctctatactaac |
329 |
Q |
| |
|
||| |||||||||| ||||| | ||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||| || || |||| |
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|
| T |
17904640 |
aggtgtcaaagtttttctttcccttggaggtgattccagaaactactcccttagctcaccagatgatgctaaaaatgttgctgattatctaaatgctaag |
17904739 |
T |
|
| Q |
330 |
tttcttagtggtcaatttggtcc |
352 |
Q |
| |
|
|| ||||||||||||| |||||| |
|
|
| T |
17904740 |
ttccttagtggtcaatctggtcc |
17904762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 17821331 - 17821004
Alignment:
| Q |
13 |
catcatcaagtggtgacattgccgtctactggggccaaaacctaggagatggcaacttgacatcaacatgtgacacaggtaattacgagattgtactctt |
112 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||||||| || ||| |||| ||||||||||||||||||||| | ||||||||| ||||||||||| |
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|
| T |
17821331 |
catcttcaagtggtggcattgccatctactggggccaaaacgtaacagaaggcaccttgacatcaacatgtgacactgataattacgatattgtactctt |
17821232 |
T |
|
| Q |
113 |
agctttcctcaatgtctttggaggaggaatagtcccaaattggaactttgcaggccattgtggtgactggagcccttgtacaaaactcgaacccgaaata |
212 |
Q |
| |
|
| ||||||| | ||||||||||||||| |||||||| || |||||||||||||||||||| || || || ||| | ||||||||||||||||||| |
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|
| T |
17821231 |
aactttccttgaattctttggaggaggaagagtcccaagtttgaactttgcaggccattgtgatggcttga---attgcagaaaactcgaacccgaaata |
17821135 |
T |
|
| Q |
213 |
aaacactgtcaacaaaaagggatcaaagttttactttcgatcggaggtgcatctggatcctactcccttagctcaccagacgatgctaaaaatgttgctg |
312 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| ||| | |||| ||| |||||| |||| | || || ||||||||| || ||| |
|
|
| T |
17821134 |
aaacactgtcaagaaaaagggttcaaagttttactttccctcgca---gcattagga------gcccttaactcatcggaagaagctaaaaatctttctg |
17821044 |
T |
|
| Q |
313 |
attacctctatactaactttcttagtggtcaatttggtcc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821043 |
attacctctatactaactttcttagtggtcaatttggtcc |
17821004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 17895067 - 17895195
Alignment:
| Q |
13 |
catcatcaagtggtgacattgccgtctactggggccaaaacctaggagatggcaacttgacatcaacatgtgacacaggtaattacgagattgtactctt |
112 |
Q |
| |
|
|||||||||||| | |||| || ||||||||||||||||| || ||| |||| ||||| | || |||||||||| ||| |||||||||||||||| | |
|
|
| T |
17895067 |
catcatcaagtgattccattaccatctactggggccaaaacacagcagaaggcaccttgaaagcagcatgtgacactggtctttacgagattgtactcct |
17895166 |
T |
|
| Q |
113 |
agctttcctcaatgtctttggaggaggaa |
141 |
Q |
| |
|
|| ||||| |||||||||||| ||||| |
|
|
| T |
17895167 |
agggttccttgatgtctttggagaaggaa |
17895195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Original strand, 17895322 - 17895387
Alignment:
| Q |
271 |
cctactcccttagctcaccagacgatgctaaaaatgttgctgattacctctatactaactttctta |
336 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||| |||||||||| || ||||||||||| |||| |
|
|
| T |
17895322 |
cctactcccttggctcatcagatgatgctaaaaattttgctgattatctttatactaacttcctta |
17895387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 17914721 - 17914779
Alignment:
| Q |
294 |
gatgctaaaaatgttgctgattacctctatactaactttcttagtggtcaatttggtcc |
352 |
Q |
| |
|
|||||||||||||| ||| |||| || | ||||||||| |||| ||||||||||||||| |
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|
| T |
17914721 |
gatgctaaaaatgtagctaattatctatttactaacttccttaatggtcaatttggtcc |
17914779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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