View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_low_19 (Length: 362)

Name: NF15720_low_19
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_low_19
NF15720_low_19
[»] chr8 (3 HSPs)
chr8 (4-205)||(12934465-12934666)
chr8 (213-319)||(12931098-12931204)
chr8 (317-355)||(12933325-12933363)
[»] chr4 (6 HSPs)
chr4 (4-205)||(14177735-14177936)
chr4 (4-205)||(28607937-28608139)
chr4 (202-319)||(14174358-14174475)
chr4 (213-319)||(28611403-28611510)
chr4 (317-355)||(14176595-14176633)
chr4 (317-355)||(28609243-28609281)
[»] chr7 (1 HSPs)
chr7 (4-205)||(15300251-15300452)
[»] chr3 (2 HSPs)
chr3 (202-319)||(51303075-51303192)
chr3 (220-319)||(24876621-24876720)
[»] chr5 (1 HSPs)
chr5 (232-319)||(38996984-38997071)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 12934666 - 12934465
Alignment:
Q  4 gatatagctccccctgaaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaatcg 103  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12934666 gatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaagcg 12934567  T
Q  104 aatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934566 aatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaag 12934467  T
Q  204 aa 205  Q
    ||    
T  12934466 aa 12934465  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 12931098 - 12931204
Alignment:
Q  213 aacactggtacgatgattaaactcacttctacaaactactccgtttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtag 312  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931098 aacactggtacgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtag 12931197  T
Q  313 aaaaggg 319  Q
    |||||||    
T  12931198 aaaaggg 12931204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 12933325 - 12933363
Alignment:
Q  317 gggttgatggtgagccagtagttgaagatgatgatgatg 355  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12933325 gggttgatggtgagccagtagttgaagatggtgatgatg 12933363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 14177936 - 14177735
Alignment:
Q  4 gatatagctccccctgaaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaatcg 103  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177936 gatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaatcg 14177837  T
Q  104 aatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaag 203  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14177836 aatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccagtgttcttttcccggattggaaag 14177737  T
Q  204 aa 205  Q
    ||    
T  14177736 aa 14177735  T

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Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 28607937 - 28608139
Alignment:
Q  4 gatatagctccccctgaaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaatcg 103  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  28607937 gatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatcagcatctgtgtaggctttcaaaatcg 28608036  T
Q  104 aatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaatgttc-ttttcccggattggaaa 202  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28608037 aatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaatgttctttttcccggattggaaa 28608136  T
Q  203 gaa 205  Q
    |||    
T  28608137 gaa 28608139  T

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Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 14174358 - 14174475
Alignment:
Q  202 agaacactggtaacactggtacgatgattaaactcacttctacaaactactccgtttggaagccaaaaatggaggatatactttactacaaggatatgta 301  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14174358 agaaaactggtaacactggtacgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgta 14174457  T
Q  302 tgatcctgtagaaaaggg 319  Q
    ||||||||||||||||||    
T  14174458 tgatcctgtagaaaaggg 14174475  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 28611510 - 28611403
Alignment:
Q  213 aacactggtacgatgattaaactcacttctacaaactactccgtttggaagccaaaaa-tggaggatatactttactacaaggatatgtatgatcctgta 311  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28611510 aacactggtacgatgattaaactcacttctacaaactactccatttggaagccaaaaaatggaggatatactttactacaaggatatgtatgatcctgta 28611411  T
Q  312 gaaaaggg 319  Q
    ||||||||    
T  28611410 gaaaaggg 28611403  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 14176595 - 14176633
Alignment:
Q  317 gggttgatggtgagccagtagttgaagatgatgatgatg 355  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14176595 gggttgatggtgagccagtagttgaagatggtgatgatg 14176633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 28609281 - 28609243
Alignment:
Q  317 gggttgatggtgagccagtagttgaagatgatgatgatg 355  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  28609281 gggttgatggtgagccagtagttgaagatggtgatgatg 28609243  T

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Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 15300452 - 15300251
Alignment:
Q  4 gatatagctccccctgaaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaatcg 103  Q
    |||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15300452 gatatagctcaccctgcaaaagcaaacacaattcctgaagcagactttctaccatccaggtcacctgccatatccgcatatgtgtagcctttcaaaatcg 15300353  T
Q  104 aatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15300352 aatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacaacttcccaatgttcttttcccggattggaaag 15300253  T
Q  204 aa 205  Q
    ||    
T  15300252 aa 15300251  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 51303075 - 51303192
Alignment:
Q  202 agaacactggtaacactggtacgatgattaaactcacttctacaaactactccgtttggaagccaaaaatggaggatatactttactacaaggatatgta 301  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  51303075 agaacattggtaacactggtacaatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactgcaaggatatgta 51303174  T
Q  302 tgatcctgtagaaaaggg 319  Q
    ||||||||||||||||||    
T  51303175 tgatcctgtagaaaaggg 51303192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 319
Target Start/End: Complemental strand, 24876720 - 24876621
Alignment:
Q  220 gtacgatgattaaactcacttctacaaactactccgtttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaaggg 319  Q
    |||||||||||||||||||||||| |||||||| | |||||||| | |||| ||||||||||||||||| ||| ||||  |||||||||| |||||||||    
T  24876720 gtacgatgattaaactcacttctagaaactacttcatttggaagtcgaaaacggaggatatactttactgcaatgatacatatgatcctgcagaaaaggg 24876621  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 38997071 - 38996984
Alignment:
Q  232 aactcacttctacaaactactccgtttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaaggg 319  Q
    ||||||||||||||||||||| |  ||  ||| | |||||| |||||||| ||||  ||| |||||||||||| ||||||||||||||    
T  38997071 aactcacttctacaaactacttcagttaaaagtcgaaaatgaaggatataatttataacatggatatgtatgaccctgtagaaaaggg 38996984  T

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