View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_low_2 (Length: 777)

Name: NF15720_low_2
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_low_2
NF15720_low_2
[»] chr7 (4 HSPs)
chr7 (9-757)||(36126850-36127595)
chr7 (379-481)||(27571822-27571922)
chr7 (324-370)||(15050181-15050226)
chr7 (429-482)||(30182320-30182373)
[»] chr4 (4 HSPs)
chr4 (375-472)||(18596995-18597091)
chr4 (434-482)||(2206367-2206415)
chr4 (379-473)||(8330075-8330168)
chr4 (394-482)||(32818394-32818480)
[»] chr2 (1 HSPs)
chr2 (389-482)||(3476453-3476545)
[»] chr6 (3 HSPs)
chr6 (394-482)||(2234490-2234576)
chr6 (428-482)||(30926802-30926856)
chr6 (428-482)||(31305871-31305925)
[»] chr1 (2 HSPs)
chr1 (429-482)||(3515826-3515879)
chr1 (329-370)||(8130851-8130892)
[»] chr3 (2 HSPs)
chr3 (379-482)||(35058321-35058422)
chr3 (428-482)||(51285577-51285631)
[»] scaffold0361 (1 HSPs)
scaffold0361 (327-366)||(14268-14307)
[»] chr8 (2 HSPs)
chr8 (375-473)||(32056320-32056416)
chr8 (323-368)||(30251625-30251670)
[»] chr5 (2 HSPs)
chr5 (329-370)||(15368136-15368177)
chr5 (379-424)||(29922586-29922631)


Alignment Details
Target: chr7 (Bit Score: 636; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 9 - 757
Target Start/End: Original strand, 36126850 - 36127595
Alignment:
Q  9 agcagcacagacacacacacaattactaacaacgattaaataactaaaccttcgcaaaactaaaaccttcaccagtcataccatacctgcatttttgcat 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  36126850 agcaacacagacacacacacaattactaacaacgattaaataactaaaccttc-----------------accagtcataccatacctgcatttttgcat 36126932  T
Q  109 ctcaaaaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatcatgttgtacatatctgttctggcacaataatttttctga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36126933 ctcaaaaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatcatgttgtatatatctgttctggcacaataatttttctga 36127032  T
Q  209 ttcttcatccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactcctatcaaatatgaaaatacaat--------------tgtat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||    
T  36127033 ttcttcatccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactcctatcaaatatgaaaatacaatgcacaatgattaattgtat 36127132  T
Q  295 tgtttaagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagagccaaaattgattctggaaacaagtttgattggtctcaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127133 tgtttaagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagagccaaaattgattctggaaacaagtttgattggtctcaa 36127232  T
Q  395 gtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaactaccataaatc 494  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36127233 gtaaaattgattttgcatcaagaattgattcctaactttaagctaaaaattgaagattttcattctagaattgattttagcactcaaactaccataaatc 36127332  T
Q  495 actttattttcaactgtcaatttttgtcaaagcagaatcaaacaagcactaaggttgtagttgtagtcatggaagagtgaagagaaaggaaaagtgcgat 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36127333 actttattttcaactgtcaatttttgtcaaagcagaatcaaacaagcactaaggttgtagttgtagtcatggaagagtgaagagaaaggtaaagtgcgat 36127432  T
Q  595 actctgatgaggaaagggaaattcttgcgagcgaatcgaccaatccaacgattgagcaggccttcaatgtcgtcacggagagtgagggagaggacggagt 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127433 actctgatgaggaaagggaaattcttgcgagcgaatcgaccaatccaacgattgagcaggccttcaatgtcgtcacggagagtgagggagaggacggagt 36127532  T
Q  695 cgacgacctccgacacggtccaatccttttggaagcgcttaccggcaacacggaggcggtagt 757  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36127533 cgacgacctccgacacggtccaatccttttggaagcggttaccggcaacacggaggcggtagt 36127595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 481
Target Start/End: Original strand, 27571822 - 27571922
Alignment:
Q  379 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcact 478  Q
    ||||||||| |||| |||| |||||||||| | |||||||||||||  | |||| ||| || |||||| || |||| |||||||||||||||||  ||||    
T  27571822 gtttgattgctctcgagtataattgattttacctcaagaattgatt--ctacttgaagttagaaattggagcttttgattctagaattgattttaacact 27571919  T
Q  479 caa 481  Q
    |||    
T  27571920 caa 27571922  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 15050181 - 15050226
Alignment:
Q  324 ctaagtgtatgtttggttccacttcaggaagagccaaaattgattct 370  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||    
T  15050181 ctaagtgtatgtttggttccactt-tggaggagccaaaattgattct 15050226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 482
Target Start/End: Complemental strand, 30182373 - 30182320
Alignment:
Q  429 actttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    |||| ||||||||||||| || |||| ||||||||||| |||||| ||||||||    
T  30182373 acttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaa 30182320  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 375 - 472
Target Start/End: Original strand, 18596995 - 18597091
Alignment:
Q  375 acaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttt 472  Q
    ||||||||||||  |||||||||||||||||||| | || |||||||||| | ||||| |||||| || |||||  |||| |||||| ||||||||||    
T  18596995 acaagtttgatttctctcaagtaaaattgattttacctccagaattgatt-ctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 2206415 - 2206367
Alignment:
Q  434 aagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    ||||||||||||| || |||| ||||||| |||||||||||||||||||    
T  2206415 aagctaaaaattggagcttttgattctaggattgatttttgcactcaaa 2206367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 473
Target Start/End: Original strand, 8330075 - 8330168
Alignment:
Q  379 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgattttt 473  Q
    ||||| ||| |||||||||||||||||| ||| || | ||| |||||  ||||| |||||| |||||| || |||| |||||| |||||||||||    
T  8330075 gtttggttgctctcaagtaaaattgattctgcctccataatggattct-aacttgaagctagaaattggagcttttgattctataattgattttt 8330168  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 482
Target Start/End: Complemental strand, 32818480 - 32818394
Alignment:
Q  394 agtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    |||| |||||||||||| || |||||||||||   | || |||||| || ||| || |||| |||||||||||||||||||||| ||||    
T  32818480 agtagaattgattttgcctccagaattgattct--atttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaa 32818394  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 389 - 482
Target Start/End: Complemental strand, 3476545 - 3476453
Alignment:
Q  389 tctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    |||| ||||||||||||||||| || |||||||||| | ||||| ||||||||||||  || |||| ||||||||||| |||||| || |||||    
T  3476545 tctcgagtaaaattgattttgcctccagaattgatt-ctaacttaaagctaaaaattagagcttttgattctagaatttatttttacattcaaa 3476453  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 2234490 - 2234576
Alignment:
Q  394 agtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    |||| |||||||||||| |  | |||||||||  ||||| |||||||||| ||||| |||| |||||||||||||||||  ||||||||    
T  2234490 agtagaattgattttgccttcaaaattgattc--aacttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaa 2234576  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 30926856 - 30926802
Alignment:
Q  428 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    ||||| |||||| |||||| || |||| |||||||||||||||||| ||||||||    
T  30926856 aacttgaagctagaaattggagttttttattctagaattgatttttacactcaaa 30926802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 31305925 - 31305871
Alignment:
Q  428 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    ||||| ||||||||||||| || |||| |||||||||||||||| | ||||||||    
T  31305925 aacttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaa 31305871  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 3515826 - 3515879
Alignment:
Q  429 actttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    |||| |||||| |||||| || ||||||||||||||||||||||| ||||||||    
T  3515826 acttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaa 3515879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 8130851 - 8130892
Alignment:
Q  329 tgtatgtttggttccacttcaggaagagccaaaattgattct 370  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  8130851 tgtatgtttggttccacttctggaggagccaaaattgattct 8130892  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 482
Target Start/End: Original strand, 35058321 - 35058422
Alignment:
Q  379 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcact 478  Q
    ||||||| | |||| |||| |||||||||||| |||||||||||||  | ||||  ||||| |||||  || |||| |||||||||||||||||  ||||    
T  35058321 gtttgatggctctcgagtagaattgattttgcctcaagaattgatt--ctacttggagctagaaattcgagcttttgattctagaattgattttaacact 35058418  T
Q  479 caaa 482  Q
    ||||    
T  35058419 caaa 35058422  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 482
Target Start/End: Original strand, 51285577 - 51285631
Alignment:
Q  428 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 482  Q
    ||||| |||||||||||   || |||| |||||||||||||||||||||||||||    
T  51285577 aacttgaagctaaaaatcacagcttttgattctagaattgatttttgcactcaaa 51285631  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 14307 - 14268
Alignment:
Q  327 agtgtatgtttggttccacttcaggaagagccaaaattga 366  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  14307 agtgtatgtttggttccacttttggaagagccaaaattga 14268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 375 - 473
Target Start/End: Original strand, 32056320 - 32056416
Alignment:
Q  375 acaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgattttt 473  Q
    ||||||||| ||| |||  ||||||||||||||| | || | |||||||| | |||||||||||| |||||| || || | ||||||||||||||||||    
T  32056320 acaagtttggttgctctatagtaaaattgattttacctccataattgatt-ctaactttaagctagaaattggagcttct-attctagaattgattttt 32056416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 30251625 - 30251670
Alignment:
Q  323 tctaagtgtatgtttggttccacttcaggaagagccaaaattgatt 368  Q
    ||||||||||||||||||||||| |  ||| |||||||||||||||    
T  30251625 tctaagtgtatgtttggttccacatttggaggagccaaaattgatt 30251670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 15368136 - 15368177
Alignment:
Q  329 tgtatgtttggttccacttcaggaagagccaaaattgattct 370  Q
    |||||||||||||||||||  ||| |||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattct 15368177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 29922586 - 29922631
Alignment:
Q  379 gtttgattggtctcaagtaaaattgattttgcatcaagaattgatt 424  Q
    ||||||||| |||| |||| |||||||||||| |||||||||||||    
T  29922586 gtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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