View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15720_low_20 (Length: 362)
Name: NF15720_low_20
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 51369602 - 51369323
Alignment:
| Q |
18 |
tgtttgtatgcaagattactagaagnnnnnnnngtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacat |
117 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51369602 |
tgtttgtatgcaagattactagaagaaaagaaagtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacat |
51369503 |
T |
|
| Q |
118 |
tgaggttggtaatagtggatgaggaaggtagtacgtacaggaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaatacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51369502 |
tgaggttggtaatagtggatgaggaaggtagcacgtgcaggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacat |
51369403 |
T |
|
| Q |
218 |
taaagatttaatcgctgctcttcaaaagcatagagttcattccgacagttaagcatatttcatgtgtttccctttcaatt |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51369402 |
taaagatttaatcgctgctcttcaaaagcatagagttcattccgacagttaagcatatttcatgtgtttccctttcaatt |
51369323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 58 - 278
Target Start/End: Original strand, 29954891 - 29955111
Alignment:
| Q |
58 |
ttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagtacgtacag |
157 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||| | |
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|
| T |
29954891 |
ttgaggtaccaaggagtgagcaagatgggtcctttactagggactcgatagcccaaacattgaggttggcaatagtggatgaggaaggaagtatgtatcg |
29954990 |
T |
|
| Q |
158 |
gaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagttcat |
257 |
Q |
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||| ||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||| ||||||||| | |
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| T |
29954991 |
gaataatgccaaagatatggaaaaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttcgt |
29955090 |
T |
|
| Q |
258 |
tccgacagttaagcatatttc |
278 |
Q |
| |
|
| | || ||||||||||||| |
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|
| T |
29955091 |
tatgtcaattaagcatatttc |
29955111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 51369307 - 51369270
Alignment:
| Q |
316 |
aatcttattgcaataatagtccatgagatgatgatgtc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
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|
| T |
51369307 |
aatcttattgcaataatagtccatgagatgttgatgtc |
51369270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 51 - 260
Target Start/End: Original strand, 11532197 - 11532406
Alignment:
| Q |
51 |
gtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagta |
150 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
11532197 |
gtggctattgaggtaccaaggagtgagaaagacgggtcctttactagggactcagtagccaaaacattgaggttggtaataatggatgaggaaggaagta |
11532296 |
T |
|
| Q |
151 |
cgtacaggaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatag |
250 |
Q |
| |
|
||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||| |||| |
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| T |
11532297 |
cgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctcttcaaaagtatag |
11532396 |
T |
|
| Q |
251 |
agttcattcc |
260 |
Q |
| |
|
|||||||||| |
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|
| T |
11532397 |
agttcattcc |
11532406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 11532634 - 11532670
Alignment:
| Q |
317 |
atcttattgcaataatagtccatgagatgatgatgtc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11532634 |
atcttattgcaataatagtccatgagatgttgatgtc |
11532670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 52 - 277
Target Start/End: Original strand, 20493020 - 20493245
Alignment:
| Q |
52 |
tggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagtac |
151 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
20493020 |
tggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtat |
20493119 |
T |
|
| Q |
152 |
gtacaggaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcataga |
251 |
Q |
| |
|
|| || |||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||| || | |||||| ||||| |||||| |
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|
| T |
20493120 |
ctatagaaaaaatgccaaagatatgggaaagattttcggttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacataga |
20493219 |
T |
|
| Q |
252 |
gttcattccgacagttaagcatattt |
277 |
Q |
| |
|
||||||||| ||| |||||||||||| |
|
|
| T |
20493220 |
gttcattccaacaattaagcatattt |
20493245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 51 - 260
Target Start/End: Original strand, 1355348 - 1355557
Alignment:
| Q |
51 |
gtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagta |
150 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || | |||||||||||| ||| |||||||||||||| |||| |
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|
| T |
1355348 |
gtggctgttgaagtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagta |
1355447 |
T |
|
| Q |
151 |
cgtacaggaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatag |
250 |
Q |
| |
|
| |||||| ||||||||||| |||| || ||||||||||||||||| ||||||||||||| ||| | || || || ||||||||| | ||| |||| |
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|
| T |
1355448 |
gtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatag |
1355547 |
T |
|
| Q |
251 |
agttcattcc |
260 |
Q |
| |
|
|||| |||| |
|
|
| T |
1355548 |
ggttccttcc |
1355557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 1362234 - 1362422
Alignment:
| Q |
51 |
gtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagta |
150 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| || | |||||||||||| ||| |||||||||||||| |||| |
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|
| T |
1362234 |
gtggctgttgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagta |
1362333 |
T |
|
| Q |
151 |
cgtacaggaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctctt |
239 |
Q |
| |
|
| |||||| ||||||||||| |||| || ||||||||||||||||| |||| |||||||| ||| | ||| | || ||||||||| |
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|
| T |
1362334 |
gtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaatatattgatgatctcattgctgctctt |
1362422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 14589273 - 14589536
Alignment:
| Q |
17 |
atgtttgtatgcaagattactagaagnnnnnnnngtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaaca |
116 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||| || ||| |||||||| ||| || |||||| |
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|
| T |
14589273 |
atgtttgtttgcaagagtactagaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaaca |
14589372 |
T |
|
| Q |
117 |
ttgaggttggtaatagtggatgaggaaggtagtacgtacaggaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaataca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||| || | ||||||||||||||||||||| |||||| |
|
|
| T |
14589373 |
ttgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaataca |
14589472 |
T |
|
| Q |
217 |
ttaaagatttaatcgctgctcttcaaaagcatagagttcattccgacagttaagcatatttcat |
280 |
Q |
| |
|
||||| | || || || ||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
14589473 |
ttaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatatttcat |
14589536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 14622931 - 14623194
Alignment:
| Q |
17 |
atgtttgtatgcaagattactagaagnnnnnnnngtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaaca |
116 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||| || ||| |||||||| ||| || |||||| |
|
|
| T |
14622931 |
atgtttgtttgcaagagtactagaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaaca |
14623030 |
T |
|
| Q |
117 |
ttgaggttggtaatagtggatgaggaaggtagtacgtacaggaaaaatgctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaataca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||| || | ||||||||||||||||||||| |||||| |
|
|
| T |
14623031 |
ttgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaataca |
14623130 |
T |
|
| Q |
217 |
ttaaagatttaatcgctgctcttcaaaagcatagagttcattccgacagttaagcatatttcat |
280 |
Q |
| |
|
||||| |||| || || ||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
14623131 |
ttaaaaatttcattgccactcttcaaaagtttagagttcattccgacaattaaacatatttcat |
14623194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 259
Target Start/End: Original strand, 12846877 - 12847070
Alignment:
| Q |
66 |
ccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagtacgtacaggaaaaatg |
165 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||| ||||||| |||||||||||| | |||| |||||| ||||| | || |||||||| |||| |
|
|
| T |
12846877 |
ccaagaagtgaggaggatgggtcctttactagggactttgtagccctaacattgaggttagcaataatggatgccgaaggaattatttacaggaacaatg |
12846976 |
T |
|
| Q |
166 |
ctaaagatatgggaaattttttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagttcattc |
259 |
Q |
| |
|
| ||||| ||||| || |||||||||||||||| |||||||| |||||||| ||||||| || ||||||||||||||| |||| |||||||| |
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|
| T |
12846977 |
caaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttcaaaagtatagggttcattc |
12847070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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