View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_21 (Length: 353)
Name: NF15720_low_21
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 1402930 - 1403227
Alignment:
| Q |
1 |
attgtaattaatctccattaacaataatgtataacctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttccc |
100 |
Q |
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| T |
1402930 |
attgtaattaatctccattaacaacaatgtataacctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttccc |
1403029 |
T |
|
| Q |
101 |
ttttgaaagcagttgctacatcattacgcacttgtgaaagaggtagcacttctcccactggaaaaaccaaaattttgaactatcatattcaaattgctga |
200 |
Q |
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| T |
1403030 |
ttttgaaagcagttgctacatcattacgcacttgtgaaagaggtagcacttctcccactggaaaaacaaaaattttgaactatcatattcaaattgctga |
1403129 |
T |
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| Q |
201 |
accttgtactctcannnnnnnattgtttctctcagcttatagaaaagaatgaataactgtttagtccttgcaatatgtatcttttccgggtttagtccc |
299 |
Q |
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| T |
1403130 |
accttgtactctca-ttttttattgtttctctcagcttatagaaaagaatgaagaactgtttagtccttgcaatatgtatcttttccggatttagtccc |
1403227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 1403239 - 1403303
Alignment:
| Q |
282 |
ttttccgggtttagtcccccaaaacattggaaaaagttggttttcgtcttgttgttttcatctca |
346 |
Q |
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| T |
1403239 |
tttttcgggtttagtcccccaaaacattggaaaaagttggttttcgtcttgttgttttcatctca |
1403303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 1409813 - 1409918
Alignment:
| Q |
34 |
acctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcactt |
133 |
Q |
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| T |
1409813 |
acctttctctgctcacacatttgcttaaaaggtagaagcatttgatttgtctcacactctatttcttttttgtacgcagctgctacatcgtcacgcactt |
1409912 |
T |
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| Q |
134 |
gtgaaa |
139 |
Q |
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|||||| |
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| T |
1409913 |
gtgaaa |
1409918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 40682213 - 40682087
Alignment:
| Q |
36 |
ctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcacttgt |
135 |
Q |
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|||||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||| |
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| T |
40682213 |
ctttctttgctcacacaaacttttaaaaggtagaagcattagattt-tttgccactccacttacctttcgaaagcaattgctacatcattacacacttgt |
40682115 |
T |
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| Q |
136 |
gaaagaggtagcacttctcccactggaa |
163 |
Q |
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|||||||| ||||| ||| ||| ||||| |
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| T |
40682114 |
gaaagagggagcacatcttccattggaa |
40682087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 4488491 - 4488596
Alignment:
| Q |
34 |
acctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcactt |
133 |
Q |
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||||||||||||||||||| ||||||| ||||||| |||||||||||| | | |||| | |||| ||||| | | || ||| ||||||| || ||||| |
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| T |
4488491 |
acctttctctgctcacacattttcttaaaaggtagaaacatttgatttgtctccaactctatttcctttttgtatgtagctgcaacatcatcacacactt |
4488590 |
T |
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| Q |
134 |
gtgaaa |
139 |
Q |
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|||||| |
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| T |
4488591 |
gtgaaa |
4488596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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