View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_22 (Length: 327)
Name: NF15720_low_22
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 9020815 - 9021126
Alignment:
| Q |
1 |
tttggcgatgtaatattgtcttcattaaaggaaagattagcttttaagaaagtttatttatttaaaaaatattttagtcaatgcaaatatctttaagaat |
100 |
Q |
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| T |
9020815 |
tttggcgatgtaattttgtcttcattaatggaaagattagcttttaagaaagtttatttatttaaaaaatattttagtcaatgcaaatatctttaagaat |
9020914 |
T |
|
| Q |
101 |
atggatagaaaatctgaatatggtgaagaaaatcgtaccgattgattcataatttgggattaaatttaactttgcnnnnnnnaatgaataatatgtctat |
200 |
Q |
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| T |
9020915 |
atggatagaaaatccgaatatggtgaagaaaatcgtaccgattgattcataatttgggattaaatttaactttgctttttttaatgaataatatgtctat |
9021014 |
T |
|
| Q |
201 |
atagnnnnnnnnnctgtggtggtcaaggttcgaacc-cgaaccttgcatattttatgtatttgttcctaacaacataattgagctaaattcacgagtaca |
299 |
Q |
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| T |
9021015 |
at-ttttttttttctgtggtggttaggattcgaacctcggaccttacatattttataca-ttgtccctaacaacacaattgaactaagttcacgagtaca |
9021112 |
T |
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| Q |
300 |
tatgtctatatttt |
313 |
Q |
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| T |
9021113 |
aatgtctatatttt |
9021126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 9012794 - 9012972
Alignment:
| Q |
1 |
tttggcgatgtaatattgtcttcattaaaggaaagattagcttttaagaaagtttatttatttaaaaaatattttagtcaatgcaaatatctttaagaat |
100 |
Q |
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| T |
9012794 |
tttggcgatgtaagtttgtcttcattaatggaaatataagcttttaaaaaggcttatttatttaaaaaatatctaagttaatgtagatatctttaagaat |
9012893 |
T |
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| Q |
101 |
atggatagaaaatctga----atatggtgaagaaaatcgtaccgattgattcataatttgggattaaatttaactttgc |
175 |
Q |
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| T |
9012894 |
atggaatgaaaagctgaaacgatatggggaagaaaatcgtaccgattgattcataatatggaatttaatttaaccttgc |
9012972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 8869237 - 8869275
Alignment:
| Q |
64 |
aaaaaatattttagtcaatgcaaatatctttaagaatat |
102 |
Q |
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| T |
8869237 |
aaaaaatatttgagtcaatgcaaatatctttaagcatat |
8869275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 32315295 - 32315251
Alignment:
| Q |
215 |
tgtggtggtcaaggttcgaaccc-gaaccttgcatattttatgta |
258 |
Q |
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| T |
32315295 |
tgtggtggtcagggttcgaaccctgaaccttgcatatattatgta |
32315251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 23756784 - 23756738
Alignment:
| Q |
215 |
tgtggtggtcaaggttcgaac-ccgaaccttgcatattttatgtatt |
260 |
Q |
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| T |
23756784 |
tgtggtgatcaaggttcgaactccgaaccttgcatattttatgtatt |
23756738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 11771778 - 11771733
Alignment:
| Q |
215 |
tgtggtggtcaaggttcgaacccgaaccttgcatattttatgtatt |
260 |
Q |
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| T |
11771778 |
tgtggtggtcgaggttcgaactcggaccttgcatatattatgtatt |
11771733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 51458749 - 51458704
Alignment:
| Q |
215 |
tgtggtggtcaaggttcgaacccgaaccttgcatattttatgtatt |
260 |
Q |
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| T |
51458749 |
tgtggtggccaggattcgaacccggaccttgcatattttatgtatt |
51458704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 48531337 - 48531304
Alignment:
| Q |
227 |
ggttcgaacccgaaccttgcatattttatgtatt |
260 |
Q |
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| T |
48531337 |
ggtttgaacccgaaccttgcatattttatgtatt |
48531304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 2022440 - 2022384
Alignment:
| Q |
39 |
agcttttaagaaagtttatttatttaaaaaatattttagtcaatgcaaatatcttta |
95 |
Q |
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| T |
2022440 |
agcttataagaaggcttatttattttaaaaatatttgagttaatgtaaatatcttta |
2022384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 3139714 - 3139762
Alignment:
| Q |
54 |
ttatttatttaaaaaatattt-tagtcaatgcaaatatctttaagaata |
101 |
Q |
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| T |
3139714 |
ttatttatttaaaaaatatttagagttaatgcaaatatctttatgaata |
3139762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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