View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_25 (Length: 311)
Name: NF15720_low_25
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 1173007 - 1172731
Alignment:
| Q |
18 |
gctatgaagttgctttatttctttggtaacacttcatataaatacctcaaccctactt--gaaggaatacatacatcttcttgagggaaacaaaaagagt |
115 |
Q |
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| T |
1173007 |
gctatgaagttgctttatttctttggtaacacttcatataaatacctcaaccctacttaagaacgaatacataaatgttcttgagggaaacaaaaagagt |
1172908 |
T |
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| Q |
116 |
cagtcgatattgagagttataatcgtcgtttaatttgcttgttattcacaattcttcactttgtttcaagtttctcactttcaggtatgcatattaaact |
215 |
Q |
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| T |
1172907 |
cagtcgatattgagagttataatcgtcgttt-----gcttgttattcacaattcttcactttgtttcaagtttctcactttcaggtatgcatattaaact |
1172813 |
T |
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| Q |
216 |
cttaatattaatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgcctaagaaagtc |
297 |
Q |
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| T |
1172812 |
cttaatattaatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgcctaagtaagtc |
1172731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 1182431 - 1182388
Alignment:
| Q |
246 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
289 |
Q |
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| T |
1182431 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
1182388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 1165149 - 1165110
Alignment:
| Q |
88 |
acatcttcttgagggaaacaaaaagagtcagtcgatattg |
127 |
Q |
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| T |
1165149 |
acatcttcttgagggaaaccaaaagagtcagtcgacattg |
1165110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 1182525 - 1182462
Alignment:
| Q |
161 |
tcacaattcttcactttgtttcaagtttctca-ctttcagg--tatgcatattaaactcttaat |
221 |
Q |
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| T |
1182525 |
tcacaagtcttcactttgtttcaagtttctcacctttcaggtatatacatatttaattcttaat |
1182462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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