View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_29 (Length: 300)
Name: NF15720_low_29
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 4863947 - 4863671
Alignment:
| Q |
17 |
aaacaaaccaacatggtattaatattatgaaatcaaatccaaattcatataaattctacaaaatcacatacctgaattccaaatgaagctgactcagcag |
116 |
Q |
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| T |
4863947 |
aaacaaaccaacatggtattaatattatgaaatcaaatccaaattcatataaattctacaaaatcacatacctgaattccaaatgaagctgactcagcag |
4863848 |
T |
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| Q |
117 |
acaaagatccaaatgattgagaattcttcaaactcaacccactttgaaacaagatcttgttagatttcaaacccaaaagggaagaaggaacaggacattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863847 |
acaaagatccaaatgattgagaattcttcaaactcaacccactttgaaacaagatcttgttagatttcaaacccaaaagggaagaaggaacaggacattt |
4863748 |
T |
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| Q |
217 |
ggggcatggaactgagaatgatgccannnnnnnggaaccaaccccaccagtaaaaaactaaactttctttcttttca |
293 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863747 |
ggggcatggaactgagaatgatgccatttttttggaaccaaccccaccagtaaaaaactaaactttctttcttttca |
4863671 |
T |
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