View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_3 (Length: 742)
Name: NF15720_low_3
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 669; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 6 - 726
Target Start/End: Original strand, 40628620 - 40629340
Alignment:
| Q |
6 |
aaaagaattaaagtgtaagtgaagaagctcgaggtcagcagccttaatattgctccnnnnnnnngattcagtttacgtgctcttactggtcctcgtattg |
105 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40628620 |
aaaagaattaaagagtaagtgaagaagctcgaggtcagcagccttaatattgctccttttttttgattcagtttacgtgctcttactggtcctcgtattg |
40628719 |
T |
|
| Q |
106 |
aaacaattccgaaagcttgagatattactacaattaagatgacccctgccaagccaacacttttactactaatatgactcagaagaaacaattcagcagc |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40628720 |
aaacaattccgaaagcttgagatattactacaattaagatgacccctgccaagccaacacttttactactaatatgactcagaagaaacaattcagcagt |
40628819 |
T |
|
| Q |
206 |
ataagcaatagagaaagggatgagttctgatattatcaaaatctccattgacaagtcttgaacgggtgttgatctttttgttctttcattcatgtctccc |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40628820 |
ataagcaatagagaaagggatgagttctgatattatcaaaatctccattgacaagtcttgaacgggtgttgatctttttgttctttcattcatgtctccc |
40628919 |
T |
|
| Q |
306 |
actcccacaacttcataagtcaaacttctgccaagtgcatctccaatttgaatactaacatgcttcatctgcttcttaaattcccatgaggaagtatcgt |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40628920 |
actcccacaacttcataagtcaaacttctgccaagtgcatctccaatttgaatactaacatgcttcatctgcttcttaaattcccatgaggaagtatcgt |
40629019 |
T |
|
| Q |
406 |
gataaaggaccttcctcataagactaagacgacgactactcatttggaaccatttttctcttcttgcaatgaaatttccagcaacttctgccatgtaatc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
40629020 |
gataaaggaccttcctcataagactaagacgacgactactcatttggaaccatttttctcttcttgcaatgaaatcttcagcaacttctgccatgtaatc |
40629119 |
T |
|
| Q |
506 |
acaaacttcgttcacctgttccaaccacacggtttctctttcatttgttgacttcaatttagacacagtattttgcaggtctttgagcccatctcttact |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
40629120 |
acaaacttcgttcacctgttccaaccacacaatttctctttcatttgttgacttcaatttagacacagtattttgcaggtctttgagcccatcttttact |
40629219 |
T |
|
| Q |
606 |
tcctccaccatcttgatcaccttattactggttattaaattttgacatctcagaatgtgatcaagcttctccatagctactactactatgatggcagaat |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40629220 |
tcctccaccatcttgatcaccttattactggttattaaattttgacatctcagaatgtgatcaagcttctccatagctactactactatgatggcagaat |
40629319 |
T |
|
| Q |
706 |
tggaaggtgttggtgcttctc |
726 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
40629320 |
tggaaggtgttggtgcttctc |
40629340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 453 - 691
Target Start/End: Complemental strand, 40636065 - 40635827
Alignment:
| Q |
453 |
aaccatttttctcttcttgcaatgaaatttccagcaacttctgccatgtaatcacaaacttcgttcacctgttccaaccacacggtttctctttcatttg |
552 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| | || ||||| ||| ||||||||||||| |||||||||||| |||||||||| ||||| |
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|
| T |
40636065 |
aaccatttttctcttgttgaaatgaaatttccagcaactttttccgagtaattacagacttcgttcacctcttccaaccacacagtttctctttgatttg |
40635966 |
T |
|
| Q |
553 |
ttgacttcaatttagacacagtattttgcaggtctttgagcccatctcttacttcctccaccatcttgatcaccttattactggttattaaattttgaca |
652 |
Q |
| |
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|||||||||||||||||||| | |||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40635965 |
ttgacttcaatttagacacaatgtttttcaggtctttgagcccatcttttacttcttccaccatctcaatcaccttattactggttattaaattttgacg |
40635866 |
T |
|
| Q |
653 |
tctcagaatgtgatcaagcttctccatagctactactac |
691 |
Q |
| |
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||| |||| |||||||||||||||||||||||| |||| |
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|
| T |
40635865 |
actccgaatttgatcaagcttctccatagctacttctac |
40635827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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