View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_30 (Length: 285)
Name: NF15720_low_30
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 41561658 - 41561401
Alignment:
| Q |
18 |
gtgagaacaatggtaactgtgacaccatttgatgcaaacaatttggccatttctgtgaaaggaatgagatggctttgagacattaatggaatgagaagaa |
117 |
Q |
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| T |
41561658 |
gtgagaacaatggtaactgtgacaccatttgatgcaaacaatttggccatttctgtgaaaggaatgagatggctttgagacattaatggaatgagaagaa |
41561559 |
T |
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| Q |
118 |
agtgttgctggttagtttgggaagccattggaaaataaactaatgttaaggatgagatgatgnnnnnnngtgaagttttagttggttcaatttaagttag |
217 |
Q |
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| T |
41561558 |
agtgttgctggttagtttgggaagccattggaaaataaactaatgttaaggatgagatgatgaaaaaaagtgaagttttagttggttcaatttaagttag |
41561459 |
T |
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| Q |
218 |
aaaagaatatgaagaataaagttnnnnnnngtatgatattgtgggggcaatctttctt |
275 |
Q |
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| T |
41561458 |
aaaagaatatgaagaataaagttaaaaaaagtatgatattgtgggggcaatctttctt |
41561401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 46656390 - 46656191
Alignment:
| Q |
18 |
gtgagaacaatggtaactgtgacaccatttgatgcaaacaatttggccat---ttctgtgaaaggaatgagatggctttgagacattaatggaatgagaa |
114 |
Q |
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| T |
46656390 |
gtgagaacaatggtaacagtgacaccatttgatgcaaacaatttggccatttattatgtgaaaggaatgagatggctttgagacataaatggaatgagaa |
46656291 |
T |
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| Q |
115 |
gaaagtgttgctggttagtttggg-aagccattggaaaataaactaatgttaaggatgagatgatgnnnnnnngtgaagttttagttggttcaatttaag |
213 |
Q |
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| T |
46656290 |
ggaagt-ctgttggttagtttgggaaagccatgggaaaataaactgatgttaagggtgagatgatgaaaaaaagtgaagttttagttagctcaatttaag |
46656192 |
T |
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