View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_31 (Length: 284)
Name: NF15720_low_31
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 93 - 265
Target Start/End: Complemental strand, 3746136 - 3745964
Alignment:
| Q |
93 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagat |
192 |
Q |
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| T |
3746136 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagat |
3746037 |
T |
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| Q |
193 |
tcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaa |
265 |
Q |
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| T |
3746036 |
tcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaa |
3745964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 3751948 - 3751781
Alignment:
| Q |
98 |
atcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttt |
197 |
Q |
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| T |
3751948 |
atcattagaaaaacaagaaacttttgattttgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctat |
3751849 |
T |
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| Q |
198 |
tggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaa |
265 |
Q |
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| T |
3751848 |
tggcatgatatcttgagtgggaaaaatcccactgcaattacaattgttccaccaccattgaagctaaa |
3751781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 3781314 - 3781187
Alignment:
| Q |
105 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
204 |
Q |
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| T |
3781314 |
gaaaaacaagacactttcgattttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatg |
3781215 |
T |
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| Q |
205 |
acatcatgagtggaaaaaaccctacttc |
232 |
Q |
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| T |
3781214 |
acgtcttgagtggaaaaaatccaacttc |
3781187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 3762926 - 3762772
Alignment:
| Q |
105 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
204 |
Q |
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| T |
3762926 |
gaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatg |
3762827 |
T |
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| Q |
205 |
acatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaa |
259 |
Q |
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| T |
3762826 |
acatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaa |
3762772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 3767313 - 3767203
Alignment:
| Q |
122 |
tgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaa |
221 |
Q |
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| T |
3767313 |
tgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaa |
3767214 |
T |
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| Q |
222 |
aaccctacttc |
232 |
Q |
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| T |
3767213 |
aaccctacttc |
3767203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 3777006 - 3776874
Alignment:
| Q |
100 |
catttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttg |
199 |
Q |
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| T |
3777006 |
cattagaaaaagaagatacctttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattg |
3776907 |
T |
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| Q |
200 |
gcatgacatcatgagtggaaaaaaccctacttc |
232 |
Q |
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| T |
3776906 |
gcatgacatagttagtggaaaaaatccaacttc |
3776874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 3755742 - 3755648
Alignment:
| Q |
171 |
gaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaa |
265 |
Q |
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| T |
3755742 |
gaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccctacttcagttgcagttgtcccaccaccaatgaaactaaa |
3755648 |
T |
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