View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_low_35 (Length: 258)

Name: NF15720_low_35
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_low_35
NF15720_low_35
[»] chr6 (6 HSPs)
chr6 (1-240)||(17995032-17995253)
chr6 (1-81)||(17994951-17995031)
chr6 (1-81)||(17999395-17999475)
chr6 (151-240)||(17999697-17999777)
chr6 (1-58)||(17999476-17999533)
chr6 (42-81)||(17999355-17999394)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 17995032 - 17995253
Alignment:
Q  1 tgtaaaatgtgaaatatttgaatatatttccatatacatgattggtttgcaaatttatttgttgtattatccaacatgatgctccttttgttgttaacta 100  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||      |||||||||||||||||||    
T  17995032 tgtaaaatgttaaatattttaatatatttccatatacatgcttggtttgcaaacttatttgttgtattatccaac------ctccttttgttgttaacta 17995125  T
Q  101 gtaattataacaatggttcttctctttttaaggttttagaaaatatccaacatcattcttatgcttcctcgcaacactctcacacacctttatcctggcc 200  Q
    ||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||            
T  17995126 gtaatca---caatggttcttctctttttaaggttttagaaaatatccaacatcattcttattcttcctcgcaacactctcacacaccttta-------- 17995214  T
Q  201 ttccttagcaactgtaccccactagcttcaaatcgatatg 240  Q
     |||||||||||||||||||||||||||||||||||||||    
T  17995215 -tccttagcaactgtaccccactagcttcaaatcgatatg 17995253  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17994951 - 17995031
Alignment:
Q  1 tgtaaaatgtgaaatatttgaatatatttccatatacatgattggtttgcaaatttatttgttgtattatccaacatgatg 81  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  17994951 tgtaaaatgttaaatattttaatatatttccatatacatgcttggtttgcaaacttatttgttgtattatccaacatgatg 17995031  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17999395 - 17999475
Alignment:
Q  1 tgtaaaatgtgaaatatttgaatatatttccatatacatgattggtttgcaaatttatttgttgtattatccaacatgatg 81  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||||||||||||||    
T  17999395 tgtaaaatgttaaatatttgaatatatttccatatacatgcttcgtttgcaaacttatttggtgtattatccaacatgatg 17999475  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 17999697 - 17999777
Alignment:
Q  151 catcattcttatgcttcctcgcaacactctcacacacctttatcctggccttccttagcaactgtaccccactagcttcaaatcgatatg 240  Q
    |||||||||||| |||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||||    
T  17999697 catcattcttattcttcctcgcaacactctcacacaccttta---------tccttagcaactgtgccccactagcttcaaatcgatatg 17999777  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17999476 - 17999533
Alignment:
Q  1 tgtaaaatgtgaaatatttgaatatatttccatatacatgattggtttgcaaatttat 58  Q
    |||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  17999476 tgtaaaatgttaaatatttgaatatgtttccatatacatgcttggtttgcaaacttat 17999533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 17999355 - 17999394
Alignment:
Q  42 ttggtttgcaaatttatttgttgtattatccaacatgatg 81  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  17999355 ttggtttgcaaacttatttgttgtattatccaacatgatg 17999394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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