View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_4 (Length: 678)
Name: NF15720_low_4
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 3 - 671
Target Start/End: Complemental strand, 40628413 - 40627745
Alignment:
| Q |
3 |
agagagtatgggttgatcaactgagagtcgtggctcaaaatggtcgctcccttgttgatgctgctggtaatggtggttgttggagcagaaaaactaagtt |
102 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40628413 |
agagagtatgggttgaccaactgagagttgtggctcaaaatggtcgctcccttgttgatgctgctggtaatggtggttgttggagcagaaaaactaagtt |
40628314 |
T |
|
| Q |
103 |
tgccaaggacatcaactgcttgttggaagagattcttaatatctcacacaggaagactacttatagcattgcaaatattattcaaggagcaacacaacaa |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40628313 |
tgccaaggacatcaactgcttgttggaagagattcttaatatctcacacaggaagactacttatagcattgcaaatattattcaaggagcaacacaacaa |
40628214 |
T |
|
| Q |
203 |
gagcttgtacgttctgaggaacatccagaaccagctacctcgtcctcctcatatcgacctgtcacagggctcaaacaggaagtccaatcaatcagaaggg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40628213 |
gagcttgtacgttctgaggaacatccagaaccagctgcctcgtcctcctcatatcgacctgtcacagggctcaaacaggaagtccaatcaatcagaaggg |
40628114 |
T |
|
| Q |
303 |
aaatggaattgatggatgcgctgcatcaagatatacgagacaggagtgaaatagatagaagatctagaatctgggtggaccagatgcaaggtattgccga |
402 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40628113 |
aaatggaattgatggatgcactgcatcaagatatacgagacaggagtgaaatagatagaagatctagaatctgggtggaccaaatgcaaggtattgccga |
40628014 |
T |
|
| Q |
403 |
tgaaattgcgtctgtcattcgcgactatgataccaaattgaagcataggtcgattctcgtttacaccttcaagtactggacccgacatgttattagtaac |
502 |
Q |
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| T |
40628013 |
tgaaattgcatctgtcattcgcgactatgataccaaattgaagcataggtcgattctcgtttacaccttcaagtactggacccgacatgttattagtaac |
40627914 |
T |
|
| Q |
503 |
aagatcaatgctattagaaacaaaattgaagatgcctcaagaagaagaagggcatatggtttgggcaagtcaatagagtcctcatcgtccaccgttcaca |
602 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40627913 |
aagatcaatgctattagaaacaaaattgaagatgcttccagaagaagaagggcatatggtttgggcaagtcaatagagtcctcatcgtccaccgttcaca |
40627814 |
T |
|
| Q |
603 |
tactacgcggaaccacacaattgtctctcgttgctaaggaatccgatgttgttggatttgatgatgatg |
671 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40627813 |
tactacgcggaaccacacaattgtctctcgttgctaaggaatccgatgttgttggatttgatgatgatg |
40627745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 248 - 666
Target Start/End: Original strand, 40637111 - 40637532
Alignment:
| Q |
248 |
tcctcatatcgacctgtcacagggctcaaacaggaagtccaatcaatcagaagggaaatggaattgatggatgcgctgcatcaagatatacgagacagga |
347 |
Q |
| |
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||||| || ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| ||||||| ||| ||| | || |
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| T |
40637111 |
tcctcgtaccgacctgtcacggggctcaaacaggaagtccaatcaatcagagaggaagaggaattgatgtttgcactgtttcaagatgtactagaaatga |
40637210 |
T |
|
| Q |
348 |
gtgaaatagatagaagatctagaatctgggtggaccagatgcaaggtattgccgatgaaattgcgtctgtcattcgcgactatgataccaaattgaagca |
447 |
Q |
| |
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| || | ||||||||||||| ||| |||||||| || ||||| ||||||| | ||||||||| |||||||||| |||||| | ||||||||| | |
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| T |
40637211 |
gagacctggatagaagatctacaatttgggtggagcaaatgcatggtattgtcaatgaaattgaatctgtcattcaacgttatgatgctaaattgaagta |
40637310 |
T |
|
| Q |
448 |
taggtcgattctcgtttacaccttcaagtactggacccgacatgttattagtaacaagatcaatgctattagaaacaaaattgaagatgcctcaagaaga |
547 |
Q |
| |
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|| ||| ||||| | ||||| |||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
40637311 |
taagtcaattctgttatacactctcaagttttggacccgacatgttattagcgaagagatcaatgctatcagaaacaaaattgaagatgcctccagaaga |
40637410 |
T |
|
| Q |
548 |
agaagggcatatggtttgggcaagtcaatagagtcctca---tcgtccaccgttcacatactacgcggaaccacacaattgtctctcgttgctaaggaat |
644 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||| ||| || ||||| ||||| ||||| |||||||| | |||||||||||||||||||| |||| |
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| T |
40637411 |
agaagggcatatggtttgggcaagacaattgagtcgtcaatgtcctccacagttcatatacttcgcggaacggcgcaattgtctctcgttgctaaagaat |
40637510 |
T |
|
| Q |
645 |
ccgatgttgttggatttgatga |
666 |
Q |
| |
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| |||| |||||||||||||| |
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| T |
40637511 |
caaatgtcgttggatttgatga |
40637532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 40636750 - 40636902
Alignment:
| Q |
7 |
agtatgggttgatcaactgagagtcgtggctcaaaatggtcgctcccttgttgatgctgctggtaatggtggttgttggagcagaaaaactaagtttgcc |
106 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||| ||| |||||||||||||| |||| || || |||| | |
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| T |
40636750 |
agtatgggttgaacaactgagaatcgtggctcaaaatggcaagtcccttcttgatgctgctgctaagggtggttgttggaggagaagaattatgtttccg |
40636849 |
T |
|
| Q |
107 |
aaggacatcaactgcttgttggaagagattcttaatatctcacacaggaagac |
159 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
40636850 |
aaggacatcaattgcttcttggatgagattcttaatctctcacacaggaagac |
40636902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 40657928 - 40658014
Alignment:
| Q |
240 |
cctcgtcctcctcatatcgacctgtcacagggctcaaacaggaagtccaatcaatcagaagggaaatggaattgatggatgcgctgc |
326 |
Q |
| |
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|||| |||||||| ||||| ||||||| ||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40657928 |
cctcctcctcctcgtatcggcctgtcatggggctcaaagagaaagtccaatcaatcagaagggaaaaggaattgatggatgcgctgc |
40658014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 40657708 - 40657809
Alignment:
| Q |
74 |
ggtggttgttggagcagaaaaactaagtttgccaaggacatcaactgcttgttggaagagattcttaatatctcacacaggaagactacttatagcattg |
173 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||||||||| |||| ||| | |||||| | | |||| |||||| |
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| T |
40657708 |
ggtggttgtttgagcagaat---taagtttgccaaggatatcaactgtttgttgaaagagattcttgatatatcagataggaaggccatttattgcattg |
40657804 |
T |
|
| Q |
174 |
caaat |
178 |
Q |
| |
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||||| |
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|
| T |
40657805 |
caaat |
40657809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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