View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_40 (Length: 249)
Name: NF15720_low_40
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 52033876 - 52034062
Alignment:
| Q |
49 |
ttataaatatttggtaagaaatgttgctttttgaagttttaatgtgatgaatacacaattttaaagannnnnnnnnctttgaaattttaaacaagtgcgt |
148 |
Q |
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| T |
52033876 |
ttataaatatttggtaagaaatgttgctttttgaagttttaatgtgatgaatacacaattttaaagatttttttttctttgaacttctaaacaagtgc-- |
52033973 |
T |
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| Q |
149 |
caaggacacttgttagcatttccctaatttaattgtaaggatgttttatgttgaatcttgggtttgaacgagcgtcacgatatccccct |
237 |
Q |
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| T |
52033974 |
caaggacacttgttagcatttccctaatttaattgtaaggatgttttatgttgaatcttgggtttgaacgagcgtcacaatatccccct |
52034062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52033822 - 52033859
Alignment:
| Q |
1 |
gacgcgttggtacaatctaatgacatttgttaaagatt |
38 |
Q |
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| T |
52033822 |
gacgcgttggtacaatctaatgacatttgttaaagatt |
52033859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 17630267 - 17630217
Alignment:
| Q |
125 |
ctttgaaattttaaacaagtgcgtcaaggacacttgttagcatttccctaa |
175 |
Q |
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| T |
17630267 |
ctttgaacttctaaacaagtgccccaaggacccttgttagcatttccctaa |
17630217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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