View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_low_45 (Length: 222)

Name: NF15720_low_45
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_low_45
NF15720_low_45
[»] chr2 (19 HSPs)
chr2 (1-217)||(45311352-45311568)
chr2 (12-108)||(14436924-14437020)
chr2 (19-116)||(39338510-39338607)
chr2 (19-116)||(10524433-10524529)
chr2 (19-107)||(387511-387599)
chr2 (12-108)||(14106180-14106275)
chr2 (8-120)||(43816092-43816203)
chr2 (17-120)||(3745674-3745777)
chr2 (11-120)||(5254580-5254688)
chr2 (19-108)||(41877209-41877298)
chr2 (11-108)||(7874603-7874701)
chr2 (20-133)||(13512472-13512584)
chr2 (19-100)||(17116553-17116634)
chr2 (39-115)||(15457817-15457893)
chr2 (48-120)||(25280960-25281032)
chr2 (50-116)||(9823695-9823761)
chr2 (130-176)||(45308176-45308222)
chr2 (19-64)||(14405534-14405579)
chr2 (11-108)||(43248884-43248981)
[»] chr7 (22 HSPs)
chr7 (7-108)||(6585209-6585310)
chr7 (19-120)||(31971780-31971881)
chr7 (4-114)||(11378772-11378881)
chr7 (19-120)||(5859928-5860029)
chr7 (19-116)||(10244515-10244612)
chr7 (19-108)||(44353221-44353310)
chr7 (19-116)||(47325534-47325631)
chr7 (19-116)||(33434480-33434577)
chr7 (22-115)||(3867453-3867545)
chr7 (19-116)||(25161143-25161240)
chr7 (11-108)||(34391509-34391606)
chr7 (19-120)||(42454379-42454480)
chr7 (19-79)||(38306595-38306655)
chr7 (19-108)||(3419056-3419143)
chr7 (47-120)||(37795359-37795432)
chr7 (47-120)||(37795687-37795760)
chr7 (19-115)||(41089396-41089489)
chr7 (19-102)||(3419321-3419402)
chr7 (54-116)||(40726140-40726202)
chr7 (47-108)||(35745489-35745550)
chr7 (19-68)||(40726202-40726251)
chr7 (19-108)||(48161698-48161786)
[»] chr5 (10 HSPs)
chr5 (19-131)||(18593577-18593689)
chr5 (20-108)||(34378435-34378523)
chr5 (19-116)||(7452923-7453020)
chr5 (19-108)||(5656750-5656839)
chr5 (23-120)||(18255095-18255192)
chr5 (19-80)||(29087813-29087874)
chr5 (23-120)||(7161659-7161756)
chr5 (26-108)||(18313311-18313393)
chr5 (19-65)||(41250893-41250939)
chr5 (19-108)||(698702-698791)
[»] chr8 (19 HSPs)
chr8 (19-131)||(12897910-12898022)
chr8 (20-116)||(22773957-22774053)
chr8 (6-113)||(35815896-35816003)
chr8 (19-116)||(31207011-31207108)
chr8 (19-116)||(32065934-32066030)
chr8 (19-108)||(16457132-16457221)
chr8 (19-108)||(20138761-20138850)
chr8 (19-108)||(37986512-37986601)
chr8 (19-115)||(35821590-35821685)
chr8 (11-108)||(3584064-3584162)
chr8 (7-120)||(15821022-15821134)
chr8 (19-108)||(24995052-24995141)
chr8 (19-108)||(9519841-9519930)
chr8 (56-120)||(9659474-9659538)
chr8 (23-120)||(13538324-13538421)
chr8 (23-120)||(13686053-13686150)
chr8 (23-108)||(36631162-36631246)
chr8 (19-69)||(27889181-27889231)
chr8 (19-69)||(27947839-27947889)
[»] chr4 (18 HSPs)
chr4 (19-134)||(27555561-27555677)
chr4 (7-120)||(2826104-2826217)
chr4 (19-120)||(35329342-35329443)
chr4 (4-108)||(49528406-49528510)
chr4 (8-108)||(46698436-46698536)
chr4 (21-108)||(35341008-35341097)
chr4 (19-116)||(7703022-7703118)
chr4 (19-120)||(30964772-30964873)
chr4 (19-120)||(4306040-4306140)
chr4 (19-108)||(31050318-31050407)
chr4 (19-116)||(8255362-8255459)
chr4 (19-116)||(8268780-8268877)
chr4 (31-108)||(9750114-9750190)
chr4 (19-85)||(20464924-20464990)
chr4 (50-108)||(30167220-30167278)
chr4 (19-116)||(8705789-8705886)
chr4 (77-116)||(29089159-29089198)
chr4 (19-108)||(36689462-36689551)
[»] chr1 (14 HSPs)
chr1 (18-120)||(24449576-24449677)
chr1 (19-116)||(30685573-30685670)
chr1 (11-108)||(46814122-46814219)
chr1 (19-108)||(6804873-6804961)
chr1 (19-116)||(7002522-7002619)
chr1 (19-120)||(31584685-31584785)
chr1 (19-116)||(14320658-14320755)
chr1 (23-120)||(24684138-24684234)
chr1 (11-67)||(24659257-24659313)
chr1 (21-108)||(27031498-27031585)
chr1 (19-120)||(5389073-5389169)
chr1 (19-120)||(5459495-5459591)
chr1 (19-108)||(40216163-40216252)
chr1 (19-120)||(41920792-41920893)
[»] chr3 (22 HSPs)
chr3 (19-108)||(2392160-2392249)
chr3 (19-108)||(2393923-2394012)
chr3 (4-116)||(4463734-4463846)
chr3 (20-120)||(47236034-47236134)
chr3 (11-108)||(23328005-23328102)
chr3 (19-116)||(45164188-45164285)
chr3 (130-215)||(54633620-54633705)
chr3 (20-120)||(50305219-50305319)
chr3 (19-120)||(31483215-31483316)
chr3 (19-120)||(34475403-34475504)
chr3 (19-108)||(21343682-21343771)
chr3 (11-108)||(40023226-40023323)
chr3 (19-109)||(9583709-9583799)
chr3 (22-116)||(19176844-19176938)
chr3 (19-89)||(30352115-30352185)
chr3 (38-114)||(37158660-37158735)
chr3 (6-108)||(50559966-50560068)
chr3 (19-108)||(17551292-17551381)
chr3 (19-108)||(45399120-45399209)
chr3 (8-126)||(25506709-25506827)
chr3 (19-86)||(43012712-43012779)
chr3 (38-108)||(53248254-53248324)
[»] scaffold0172 (1 HSPs)
scaffold0172 (21-115)||(19255-19349)
[»] chr6 (6 HSPs)
chr6 (45-116)||(3254318-3254389)
chr6 (8-70)||(33697792-33697854)
chr6 (19-120)||(10542166-10542266)
chr6 (23-116)||(15944338-15944431)
chr6 (19-108)||(3117829-3117918)
chr6 (45-120)||(15132485-15132560)
[»] scaffold0434 (1 HSPs)
scaffold0434 (19-90)||(2348-2419)
[»] scaffold0085 (1 HSPs)
scaffold0085 (19-108)||(48670-48759)
[»] scaffold0343 (1 HSPs)
scaffold0343 (19-108)||(6040-6129)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 45311568 - 45311352
Alignment:
Q  1 ttttttgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45311568 ttttttgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgttta 45311469  T
Q  101 ataatattggccgattcaaagtaaaataaaattgggcatgttattcctttcctacttaatagatcaaaatgaggaacatgccccttttctcttcttcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45311468 ataatattggccgattcaaagtaaaataaaattgggcatgttattcctttcctacttaatagatcaaaatgaggaacatgccccttttctcttcttcatg 45311369  T
Q  201 tagagagatcctatgct 217  Q
    |||||||||||||||||    
T  45311368 tagagagatcctatgct 45311352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 14437020 - 14436924
Alignment:
Q  12 ttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||| || |||||||||| |||| |||||| |||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||    
T  14437020 ttgtttggttgttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatt 14436924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 39338607 - 39338510
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | | |||| |||| ||  | ||||||||||||||||| |||||||    
T  39338607 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacattgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 10524433 - 10524529
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| || | ||||||  ||||||||||||| ||||||||||| | |||||| |||||| ||| ||||||||||||||||| |||||||    
T  10524433 gtggttatggtgtaccatctatatgctgcaccatttgtatattgtttcgtccataccttgcgtcttgcaggg-tggcgtttaataatatttgccgatt 10524529  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 387511 - 387599
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatat 107  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | || |||  ||||||| | || |||||||||||||    
T  387511 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccctgcgacttgcggtgatgacgtttaataatat 387599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 14106275 - 14106180
Alignment:
Q  12 ttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||| ||||||||||||| |||| |||||| |||||||||| ||||||||||||| | | || ||| ||||||| || |||||||||||||||||    
T  14106275 ttgtttggtggttatggtgtaccgtctatatgcggcaccatttctatcttgtttcgt-cataccctgcgtcttgcgaggatggcgtttaataatatt 14106180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 43816203 - 43816092
Alignment:
Q  8 ggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatat 107  Q
    ||||||| |||| ||||||||||| |||| |||||| |||| ||||||||  ||||||||||| | |||||| | |||||||  || |||||||||||||    
T  43816203 ggttttgatttg-ggttatggtgtaccgtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatat 43816105  T
Q  108 tggccgattcaaa 120  Q
    | |||||||||||    
T  43816104 ttgccgattcaaa 43816092  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 3745674 - 3745777
Alignment:
Q  17 ttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||| ||| || | ||||||  ||||||||||||||||||||||||| | |||||| ||||  |||| || | |||||||||||| |||||||    
T  3745674 ttgtggttatgatgtaccatctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgatt 3745773  T
Q  117 caaa 120  Q
    ||||    
T  3745774 caaa 3745777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 5254580 - 5254688
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattgg 110  Q
    ||||||| | ||||||||||| |||| |||||| ||||||||||||||| | |||||||| | |||| | ||||||| || || |||||||||||||| |    
T  5254580 tttgtttggaggttatggtgtaccgtctatatgcggcaccatttgtatc-tatttcgtccataccttacgtcttgcgaggatgacgtttaataatatttg 5254678  T
Q  111 ccgattcaaa 120  Q
    | ||||||||    
T  5254679 ctgattcaaa 5254688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 41877298 - 41877209
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||  || ||||||||||| ||||||||||| |  ||||| |||||||||| ||| |||||||||||||    
T  41877298 gtggttatggtgtaccgtctatatacggtaccatttgtatattgtttcgtccatatcttgcgtcttgcggggatggagtttaataatatt 41877209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 7874603 - 7874701
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcg-tttaataatatt 108  Q
    ||||||| ||||||||||||| |||| |||||| ||| ||||||||||||||||| |||  | |||||  ||||||| || ||||| ||||||||||||    
T  7874603 tttgtttggtggttatggtgtaccgtctatatgcggcgccatttgtatcttgttttgtctataccttgtgtcttgcgaggatggcgttttaataatatt 7874701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 13512584 - 13512472
Alignment:
Q  20 tggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaa 119  Q
    |||||||| ||| |||| |||||| |||| ||||||||| ||||||||||| | | |||| |||||||||  || ||||||||||||||   ||||||||    
T  13512584 tggttatgttgtaccgtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatatttttcgattcaa 13512485  T
Q  120 agtaaaataaaatt 133  Q
    |  |||||||||||    
T  13512484 a-aaaaataaaatt 13512472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 17116634 - 17116553
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgttta 100  Q
    |||||||| |||| |||| |||||| |||| |||||||||||||| |||||| | |||||| |||||||||| || ||||||    
T  17116634 gtggttatagtgtaccgtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttgcggggatgacgttta 17116553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 15457817 - 15457893
Alignment:
Q  39 atatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgat 115  Q
    ||||| |||||||||||||||||||||||||| |  | ||| |||||||||| || ||||||||| |||| ||||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 25281032 - 25280960
Alignment:
Q  48 accatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    ||||||| ||||||||||||||| | || ||| ||||| |||| || ||||||||||||||  ||||||||||    
T  25281032 accatttatatcttgtttcgtccataccctgcgtcttgtggggatgacgtttaataatattttccgattcaaa 25280960  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 9823695 - 9823761
Alignment:
Q  50 catttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||||||| | | | |||||  |||||||| | ||||||||||||||||| |||||||    
T  9823695 catttgtatcttgtttcattcataccttgtgtcttgcggagatggcgtttaataatatttgccgatt 9823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 45308222 - 45308176
Alignment:
Q  130 aattgggcatgttattcctttcctacttaatagatcaaaatgaggaa 176  Q
    |||||| |||| |||||||||||||||||||  ||||||||||||||    
T  45308222 aattggacatgctattcctttcctacttaatgaatcaaaatgaggaa 45308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 14405534 - 14405579
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtt 64  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||    
T  14405534 gtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtt 14405579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 43248981 - 43248884
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||| | ||||||| | | |||| |||||| ||| |||||| ||||||||||||||| | |||||  ||||| | || || ||||||||||||||    
T  43248981 tttgtttgggggttatgatataccgtctatatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatatt 43248884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 6585209 - 6585310
Alignment:
Q  7 gggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataata 106  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  6585209 gggttttgtttggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataata 6585308  T
Q  107 tt 108  Q
    ||    
T  6585309 tt 6585310  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 31971881 - 31971780
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||| |||||||||    
T  31971881 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgattca 31971782  T
Q  119 aa 120  Q
    ||    
T  31971781 aa 31971780  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 11378881 - 11378772
Alignment:
Q  4 tttgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaata 103  Q
    ||||||||||| |||||||||||||||| |||| |||||| |||| ||| |||||||| || ||||| | |||||| |||||||||||||||||||||||    
T  11378881 tttgggttttgatttgtggttatggtgtaccgtttatatgcggcatcatctgtatcttatt-cgtccataccttgcgtcttgcggggttggcgtttaata 11378783  T
Q  104 atattggccga 114  Q
    ||||| |||||    
T  11378782 atatttgccga 11378772  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 5860029 - 5859928
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| |  | ||| |||||||||| || |||||||||||||| |||||||||    
T  5860029 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaataatatttgccgattca 5859930  T
Q  119 aa 120  Q
    ||    
T  5859929 aa 5859928  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 10244515 - 10244612
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| | || |||||| |||||||||||||||||||||||||| | |||||| |||||||| | ||| ||||||||||||| |||||||    
T  10244515 gtggttatggtgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggagatggagtttaataatatttgccgatt 10244612  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 44353310 - 44353221
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| || | |||||| |||||||||||||||||||||||||| | | |||| |||||||||| |||||||||||||||||    
T  44353310 gtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatt 44353221  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 47325631 - 47325534
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| ||||||  ||||||||||||||||||||||||| | |||||| |||| || || || |||||||||||||| |||||||    
T  47325631 gtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaataatatttgccgatt 47325534  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 33434577 - 33434480
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||   | ||||||||||||||| ||||||| | |||||| | |||||||| ||||||||||||||||| |||||||    
T  33434577 gtggttatggtgtaccgtctatatacagaaccatttgtatcttgcttcgtccataccttgcgtattgcggggatggcgtttaataatatttgccgatt 33434480  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 3867453 - 3867545
Alignment:
Q  22 gttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgat 115  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||  | |||| | |||||| ||| ||  ||||||||||||| ||||||    
T  3867453 gttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcaataccttacgtcttgc-gggatgaagtttaataatatttgccgat 3867545  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 25161143 - 25161240
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||  ||||||||||| |||||||||||| | | ||||  ||||| ||||| || |||||||||||||| |||||||    
T  25161143 gtggttatggtgtaccgtctatatacggcaccatttgcatcttgtttcgttcataccttaaatcttacggggatgacgtttaataatatttgccgatt 25161240  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 34391509 - 34391606
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||| |||||||||||||  ||| |||||| ||||  |||||||||||||||||||| | || ||| || ||||||| || ||||||||||||||    
T  34391509 tttgtttggtggttatggtgtatcgtctatatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatatt 34391606  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 42454480 - 42454379
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| | || |||||| ||||||||||||| |||||||||||  |  ||||| |||||||||| ||  ||||||||||||| || ||||||    
T  42454480 gtggttatggtgtactgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatgatgtttaataatatttgctgattca 42454381  T
Q  119 aa 120  Q
    ||    
T  42454380 aa 42454379  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38306595 - 38306655
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgc 79  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | ||||||    
T  38306595 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgc 38306655  T

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Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 3419143 - 3419056
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||  | |||| | ||||||||||||||||||| | |||||| |||||||||| || ||||||||||||||    
T  3419143 gtggttatggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatt 3419056  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 37795359 - 37795432
Alignment:
Q  47 caccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    |||||||||||||||||||||||| | |||||| ||||| ||||  | |||||||||||||| ||||| |||||    
T  37795359 caccatttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccgactcaaa 37795432  T

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Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 37795687 - 37795760
Alignment:
Q  47 caccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    |||||||||||||||||||||||| | |||||| ||||| ||||  | |||||||||||||| ||||| |||||    
T  37795687 caccatttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccgactcaaa 37795760  T

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Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 41089489 - 41089396
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgat 115  Q
    ||||||||||||| |||| |||||| ||||||| |||||||||||||||||| | |||||  |||||| | | |||| |||||||||||| ||||||    
T  41089489 gtggttatggtgtaccgtctatatgcggcacca-ttgtatcttgtttcgtccataccttg--tcttgcagagatggcatttaataatatttgccgat 41089396  T

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Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 3419402 - 3419321
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaat 102  Q
    ||||||||||||| |||| |||  | |||| | ||||||||||||||||||| | |||||| |||||||||| |||||||||||    
T  3419402 gtggttatggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaat 3419321  T

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Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 40726202 - 40726140
Alignment:
Q  54 tgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||||||| | |||||| |||||||||| || | |||||||||||| |||||||    
T  40726202 tgtatcttgtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 35745550 - 35745489
Alignment:
Q  47 caccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||||||||||||||||||||| | |||||| | || ||| | || ||||||||||||||    
T  35745550 caccatttgtatcttgtttcgtccataccttgcgttttacggagatgacgtttaataatatt 35745489  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 40726251 - 40726202
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgt 68  Q
    ||||||||||||| |||| ||||||| ||| ||||||||| |||||||||    
T  40726251 gtggttatggtgtaccgtctatatgtagcatcatttgtattttgtttcgt 40726202  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 48161786 - 48161698
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||| ||||| |||||||| ||| ||||||| |  ||||  |||||| ||| || ||||||||||||||    
T  48161786 gtggttatggtgtgccgtctatatgcggcactatttgtattttg-ttcgtccatatcttgtgtcttgcagggatgacgtttaataatatt 48161698  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 18593577 - 18593689
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| |||||| |||||||| | ||||||||||||||| | ||||||||||||||||| || |||||||||||||| |||||||||    
T  18593577 gtggttatggtgtaccgtctatatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatgacgtttaataatatttgccgattca 18593676  T
Q  119 aagtaaaataaaa 131  Q
    ||  |||||||||    
T  18593677 aaaaaaaataaaa 18593689  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 34378435 - 34378523
Alignment:
Q  20 tggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||||||||| |||| |||||| |||||||||||||||| || |||||| | |||||| |||||||| | |||||||||||||||||    
T  34378435 tggttatggtgtaccgtctatatgcggcaccatttgtatctcgtctcgtccatgccttgcgtcttgcggagatggcgtttaataatatt 34378523  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 7452923 - 7453020
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||| |||||||||||||||||| || |||| | |||||| ||||||  || ||  ||||||||||||| |||||||    
T  7452923 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgccgatt 7453020  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5656839 - 5656750
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||  ||| |||| |||||| |||| |||||||||||| |||||| | | |||||| |||||||| | |||||||||||||||||    
T  5656839 gtggttatcatgtaccgtctatatgcggcatcatttgtatcttatttcgttcataccttgcgtcttgcggtgatggcgtttaataatatt 5656750  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 18255192 - 18255095
Alignment:
Q  23 ttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    ||||| ||| |||| |||||| ||||| |||||||||||||||||||  | || |||||||| ||||| |  ||||||| |||||| |||||||||||    
T  18255192 ttatgatgtaccgtctatatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgattcaaa 18255095  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 29087813 - 29087874
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgca 80  Q
    ||||||||| ||| |||| |||||| |||||||||||||||||||||||||| | |||||||    
T  29087813 gtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgca 29087874  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 7161756 - 7161659
Alignment:
Q  23 ttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    ||||||||| |||| ||||||   ||| ||||||||||| |||||||| |  ||||| ||||| ||||  | |||||||||||||| |||||||||||    
T  7161756 ttatggtgtaccgtctatatgctacactatttgtatcttatttcgtccatatcttgcgtcttgtggggaagacgtttaataatatttgccgattcaaa 7161659  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 18313393 - 18313311
Alignment:
Q  26 tggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||| |||| |||||| ||||||||||| |||||||||| ||| | |||||| |||| | ||  || ||||||||||||||    
T  18313393 tggtgtaccgtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatt 18313311  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 41250939 - 41250893
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgttt 65  Q
    ||||||||||||| |||| |||||| |||||||||| ||||||||||    
T  41250939 gtggttatggtgtaccgtctatatgcggcaccatttatatcttgttt 41250893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 698702 - 698791
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||||| |||| |||| |||||| ||||||||||||||| | |||| ||| | |||| | |||||| | | || ||||||||||||||    
T  698702 gtggttatagtgtaccgtctatatgcggcaccatttgtatcatatttcatccataccttacgtcttgcagagatgtcgtttaataatatt 698791  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 12898022 - 12897910
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||| ||||||| |||| |||||| |||||||||||||||||||||||||| |  |||||||||||||||| || |||||||||||||| ||||||| |    
T  12898022 gtggtaatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcttgcatcttgcggggatgacgtttaataatatttgccgattta 12897923  T
Q  119 aagtaaaataaaa 131  Q
    ||  |||||||||    
T  12897922 aaagaaaataaaa 12897910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 22773957 - 22774053
Alignment:
Q  20 tggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    |||||||||||| |||| |||||| |||||||||||||||| ||||||||| | |||||| |||||||||| ||||||||||||||||| |||||||    
T  22773957 tggttatggtgtaccgtctatatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 22774053  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 35816003 - 35815896
Alignment:
Q  6 tgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataat 105  Q
    |||| ||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||| | ||||| || ||||||||||||||    
T  35816003 tgggctttgtttgggggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatggcgtttaataat 35815904  T
Q  106 attggccg 113  Q
    ||| ||||    
T  35815903 atttgccg 35815896  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 31207108 - 31207011
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||||||||| | |||||| ||||||| || ||||||||||||||||| |||||||    
T  31207108 gtggttatggtgtaccgtttatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgaggatggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 32066030 - 32065934
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||| ||| |||| |||||| |||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| |||||||    
T  32066030 gtggttatg-tgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatggcgtttaataatatttgccgatt 32065934  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 16457221 - 16457132
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||| | |||||| ||| || ||||||||||||||    
T  16457221 gtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttacgtcttgcagggatgacgtttaataatatt 16457132  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 20138761 - 20138850
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| || | |||||| |||||||||||||||||||||||||| | | |||| |||||||||| |||||||||||||||||    
T  20138761 gtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatt 20138850  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 37986601 - 37986512
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| ||||||  ||||||||||||||||||||||||| | |||||| |||||||||| || | ||||||||||||    
T  37986601 gtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccgtgccttgcgtcttgcggggatgacatttaataatatt 37986512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 35821590 - 35821685
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgat 115  Q
    ||||||||||||| |||| |||||| |||| |||||||||| ||||||||||  ||||||| |||||||| | ||||||||||||||||| ||||||    
T  35821590 gtggttatggtgtaccgtctatatgcggcatcatttgtatcatgtttcgtcc-atccttgcgtcttgcggagatggcgtttaataatatttgccgat 35821685  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 3584064 - 3584162
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatc-ttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||||||| | | ||| || ||||| |||| |||||||||||||||||    
T  3584064 tttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatctttgtttcgttcatacctcgcgtcttgtggggatggcgtttaataatatt 3584162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 15821134 - 15821022
Alignment:
Q  7 gggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataata 106  Q
    ||||||| ||| ||||||||||| | |||| |||||| |||||||||||||||||||| ||||| | |||||| ||||||  || || ||||||||||||    
T  15821134 gggttttatttggtggttatggtataccgtctatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgc-aggatgacgtttaataata 15821036  T
Q  107 ttggccgattcaaa 120  Q
    || || ||||||||    
T  15821035 tttgctgattcaaa 15821022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 24995141 - 24995052
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| | || |||| | |||||||||||||||||||||||||| | |||||| |||| ||||| ||||||| |||||||||    
T  24995141 gtggttatggtgtactgtctataagcggcaccatttgtatcttgtttcgtccataccttgcgtcttacggggatggcgttcaataatatt 24995052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 9519841 - 9519930
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||| ||| | || |||||| |||||||||||||||||||||||||| | |||||| |||||  ||| ||| |||||||||||||    
T  9519841 gtggttatgatgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgtagggatggtgtttaataatatt 9519930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 9659474 - 9659538
Alignment:
Q  56 tatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    ||||||||||||||| | |||||| |||||||||| || |||||||||||||| |||||||||||    
T  9659474 tatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgattcaaa 9659538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 13538324 - 13538421
Alignment:
Q  23 ttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    ||||| ||| |||| |||||| || ||||||||||| || |||||||| | |||||| ||||| || | ||||||||||||||||| || ||||||||    
T  13538324 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattcaaa 13538421  T

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Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 13686150 - 13686053
Alignment:
Q  23 ttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    ||||| ||| |||| |||||| || ||||||||||| || |||||||| | |||||| ||||| || | ||||||||||||||||| || ||||||||    
T  13686150 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattcaaa 13686053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 36631162 - 36631246
Alignment:
Q  23 ttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||| |||| |||||| |||||||||||||||||||||| | | | |||||| |||||| ||| |||||| ||||||||||    
T  36631162 ttatggtgtaccgtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatggcgtataataatatt 36631246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27889181 - 27889231
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtc 69  Q
    ||||||||||||| | || |||||| |||||||||||||||||||||||||    
T  27889181 gtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtc 27889231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27947839 - 27947889
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtc 69  Q
    ||||||||||||| | || |||||| |||||||||||||||||||||||||    
T  27947839 gtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtc 27947889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 27555677 - 27555561
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgc-ggggttggcgtttaataatattggccgattc 117  Q
    ||||||||||||| || | |||||| ||||| |||||||||||||||||||| | |||||| |||||| |||| ||||||||||||||||| |||||||     
T  27555677 gtggttatggtgtaccatctatatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatggcgtttaataatatttgccgatta 27555578  T
Q  118 aaagtaaaataaaattg 134  Q
    ||| |||||||||||||    
T  27555577 aaaataaaataaaattg 27555561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 2826104 - 2826217
Alignment:
Q  7 gggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataata 106  Q
    ||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||| ||||| | |||||| |||||| | | || ||||||||||||    
T  2826104 gggttttgtttgggggttatggtgtaccgtatatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataata 2826203  T
Q  107 ttggccgattcaaa 120  Q
    || || ||||||||    
T  2826204 tttgctgattcaaa 2826217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 35329342 - 35329443
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| ||||||  ||||||||||||||||||||||||| | |||| | |||||||||| ||||||||| ||||||| |||||||||    
T  35329342 gtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatggcgtttactaatatttgccgattca 35329441  T
Q  119 aa 120  Q
    ||    
T  35329442 aa 35329443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 49528406 - 49528510
Alignment:
Q  4 tttgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaata 103  Q
    ||||||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||||||||||| | ||||   | |||||||||||| |||||||     
T  49528406 tttgggttttgatttgtggttttggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgttttgcggggttggtgtttaatg 49528505  T
Q  104 atatt 108  Q
    |||||    
T  49528506 atatt 49528510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 46698536 - 46698436
Alignment:
Q  8 ggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatat 107  Q
    |||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||| || | |||||| |||| |  || || |||||||||||||    
T  46698536 ggttttgtcttgtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatat 46698437  T
Q  108 t 108  Q
    |    
T  46698436 t 46698436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 35341097 - 35341008
Alignment:
Q  21 ggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgc--ggggttggcgtttaataatatt 108  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| | | |||| ||||||  |||| || ||||||||||||||    
T  35341097 ggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatatt 35341008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 7703022 - 7703118
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||| ||||||||||||||||| |||| ||| | |||||  |||||||||| || |||||||||||||| |||||||    
T  7703022 gtggttatggtgtaccgtctatatgcggcaccatttgtatctt-tttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccgatt 7703118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 30964772 - 30964873
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| ||||||   || ||||||||||||||||||||| | |||||| |||||| ||| ||| ||||||||||||| | |||||||    
T  30964772 gtggttatggtgtaccgtctatatgcaacatcatttgtatcttgtttcgtccataccttgcgtcttgcagggatggtgtttaataatatttgtcgattca 30964871  T
Q  119 aa 120  Q
    ||    
T  30964872 aa 30964873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 4306040 - 4306140
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| |||||| |||||||||| |||||| |||||| | | |||||| |||| ||||| || | |||||||||||| |||||||||    
T  4306040 gtggttatggtgtaccgtctatatgcggcaccatttatatctt-tttcgttcataccttgcgtcttccggggatgacatttaataatatttgccgattca 4306138  T
Q  119 aa 120  Q
    ||    
T  4306139 aa 4306140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 31050407 - 31050318
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||| | || ||||||||||||||||||||| | | | |||||||||||||  | ||||||||||||||    
T  31050407 gtggttatggtgtaccgtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacgacgtttaataatatt 31050318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 8255362 - 8255459
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||| ||| |||| |||||| |||| |||||||||||||| ||||||   ||||  ||||||||| | | ||||||||||||||| |||||||    
T  8255362 gtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggagatagcgtttaataatatttgccgatt 8255459  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 8268780 - 8268877
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||| ||| |||| |||||| |||| |||||||||||||| ||||||   ||||  ||||||||| | | ||||||||||||||| |||||||    
T  8268780 gtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggagatagcgtttaataatatttgccgatt 8268877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 9750114 - 9750190
Alignment:
Q  31 ttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||| |||||| ||||||||||||||||||||||||||   || ||| |||||||||| || ||||||||||||||    
T  9750114 ttccgtctatatgcggcaccatttgtatcttgtttcgtccaaacc-tgcgtcttgcggggatgacgtttaataatatt 9750190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 20464924 - 20464990
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttg 85  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||||| | | | ||||||||||||    
T  20464924 gtggttatggtgtaccgtctatatacggcaccatttgtatcttgtttctttcataccttgcatcttg 20464990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 30167278 - 30167220
Alignment:
Q  50 catttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||||||||||| | |||||| ||||||| || || ||||||||||||||    
T  30167278 catttgtatcttgtttcgtccataccttgcgtcttgcgaggatgacgtttaataatatt 30167220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 8705886 - 8705789
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| ||||||  |||||||||||||| ||  |||||| | ||| || |||||  ||| || |||||||||||||| |||||||    
T  8705886 gtggttatggtgtaccgtctatatgcagcaccatttgtatcctgcctcgtccatacctcgcgtcttgaagggatgacgtttaataatatttgccgatt 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 29089159 - 29089198
Alignment:
Q  77 tgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  29089159 tgcatcttgtggggatggcgtttaataatattggccgatt 29089198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 36689551 - 36689462
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||||| |||| |||| |||||| |  |||||||||||||| |||||||| | ||| || |||||||| | |||  ||||||||||||    
T  36689551 gtggttatagtgtaccgtctatatgcgataccatttgtatcttatttcgtccatacctcgcgtcttgcggagatggtatttaataatatt 36689462  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 24449677 - 24449576
Alignment:
Q  18 tgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattc 117  Q
    |||||||||||||| |||| ||||||  ||||||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||| ||| ||||    
T  24449677 tgtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcatcttgc-gggatggcgtttaataatatttgccaattc 24449579  T
Q  118 aaa 120  Q
    |||    
T  24449578 aaa 24449576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 30685670 - 30685573
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| || | |||||| |||||||||||||||||||||||||| | |||||| |||||||||| || |||||||||||||| |||||||    
T  30685670 gtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 46814219 - 46814122
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||| ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | |||| | ||||||| || |||||||||||||||||    
T  46814219 tttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatggcgtttaataatatt 46814122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 6804873 - 6804961
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||| ||||||||||||||||| |||||||| | |||||| |||||||||| | |||||||||||||||    
T  6804873 gtggttatggtgtaccgtctatatgcggcaccatttgtatctt-tttcgtccataccttgcgtcttgcggggatagcgtttaataatatt 6804961  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 7002522 - 7002619
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||| |||||| ||||||||||||||||||| | |||| ||| ||||| || || |||||||||||||| |||||||    
T  7002522 gtggttatggtgtaccgtttatatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttgccgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 31584785 - 31584685
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    |||||||||||||  ||| |||||| |||||||||||||||||||||||| | | |||||| ||||||| || ||| ||||||||||||| |||||||||    
T  31584785 gtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcgt-cataccttgcgtcttgcgaggatggtgtttaataatatttgccgattca 31584687  T
Q  119 aa 120  Q
    ||    
T  31584686 aa 31584685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 14320658 - 14320755
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||| | |||||||||||| | |||| |||| | |||||||||||| |||| || |||||||||||||| |||||||    
T  14320658 gtggttatggtgtaccgtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 24684234 - 24684138
Alignment:
Q  23 ttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    ||||||||| |||| |||||||||||||||||||||||||||| || | | ||||||||||||| ||| || | | |||||||||| |||||||||||    
T  24684234 ttatggtgtaccgtctatatgtggcaccatttgtatcttgttt-gttcataccttgcatcttgcagggatgacatataataatatttgccgattcaaa 24684138  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 24659257 - 24659313
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcg 67  Q
    ||||||| ||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  24659257 tttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 24659313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 27031585 - 27031498
Alignment:
Q  21 ggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| |  ||||| ||||||| || || ||||||||||||||    
T  27031585 ggttatggtgtaccgtatatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatt 27031498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 5389169 - 5389073
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    |||||||| |||| |||| |||||| ||||||||||||||||| |||||||| | ||||||     | |||| |||||||||||||||||  ||||||||    
T  5389169 gtggttatagtgtgccgtctatatgcggcaccatttgtatcttatttcgtccataccttgc-----gtggggatggcgtttaataatattttccgattca 5389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 5459495 - 5459591
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| |||||| |||||||||||||| ||| ||||||| | |||||| | |||||     |||||||||||||||| || ||||||    
T  5459495 gtggttatggtgtaccgtctatatgcggcaccatttgtatgttgcttcgtccataccttgcgtattgcg-----ggcgtttaataatatttgctgattca 5459589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 40216252 - 40216163
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||| ||| |||| |||||| |||||||||||||||||| ||||||| |  || || ||||||| || || ||||||||||||||    
T  40216252 gtggttatgatgtaccgtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatt 40216163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 41920792 - 41920893
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||| ||||| |||| ||||||  |||| |||||||| || |||||||| | |||| | |||||||| | || |||||||||||||| | |||||||    
T  41920792 gtggttacggtgtaccgtctatatgcagcacaatttgtattttatttcgtccataccttacgtcttgcggagatgacgtttaataatatttgtcgattca 41920891  T
Q  119 aa 120  Q
    ||    
T  41920892 aa 41920893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 2392249 - 2392160
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | |||||| |||||||||| || ||||||||||||||    
T  2392249 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatt 2392160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 2394012 - 2393923
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | |||||| |||||||||| || ||||||||||||||    
T  2394012 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatt 2393923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 4463846 - 4463734
Alignment:
Q  4 tttgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaata 103  Q
    ||||||||||| |||||||||||||||  |||| |||||| |||||||||||| | ||||||||||| |  ||||| ||||| ||||||| |||||||||    
T  4463846 tttgggttttgatttgtggttatggtgcaccgtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaata 4463747  T
Q  104 atattggccgatt 116  Q
    ||||| |||||||    
T  4463746 atatttgccgatt 4463734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 47236034 - 47236134
Alignment:
Q  20 tggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaa 119  Q
    |||||||||| | |||| |||||| |||||||||||||||||||||||||| | |||||| |||||| ||| ||||||||||||||||| || |||||||    
T  47236034 tggttatggtataccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcagggatggcgtttaataatatttgctgattcaa 47236133  T
Q  120 a 120  Q
    |    
T  47236134 a 47236134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 23328102 - 23328005
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||||| | |||||| | |||| ||| | |||||||||||||||    
T  23328102 tttgtttggtggttatggtgtaccgtatatatgcggcaccatttatatcttgtttcgtccataccttgcgtattgcagggatagcgtttaataatatt 23328005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 45164188 - 45164285
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||| |||| | ||||||||||||||||| |   ||||||||||||| |||||||    
T  45164188 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccataccttgcatcttgcggggataatgtttaataatatttgccgatt 45164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 54633620 - 54633705
Alignment:
Q  130 aattgggcatgttattcctttcctacttaatagatcaaaatgaggaacatgccccttttctcttcttcatgtagagagatcctatg 215  Q
    |||||| |||||| |||||||||||||| |||||||||||||||||||||||||  ||| |||||||||| || ||||||||||||    
T  54633620 aattggacatgtttttcctttcctactttatagatcaaaatgaggaacatgccctctttatcttcttcatataaagagatcctatg 54633705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 50305319 - 50305219
Alignment:
Q  20 tggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaa 119  Q
    |||||||||||| |||| |||||| | |||||||||||||||||| ||||| | |||||| |||||||||  ||||||||||||||||| || |||||||    
T  50305319 tggttatggtgtaccgtctatatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatatttgctgattcaa 50305220  T
Q  120 a 120  Q
    |    
T  50305219 a 50305219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 31483215 - 31483316
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||| || | | |||||| ||||| |||| ||| ||||||||||||| |||||||||    
T  31483215 gtggttatggtgtaccgtctatatgcagcaccatttgtatcttgttttgttcataccttgcgtcttgtggggatggtgtttaataatatttgccgattca 31483314  T
Q  119 aa 120  Q
    ||    
T  31483315 aa 31483316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 34475504 - 34475403
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    ||||||||||| | |||| |||||| |||||||||||||||||||||||| | | || ||| |||||||||| || |||||||||||||  |||||||||    
T  34475504 gtggttatggtataccgtctatatggggcaccatttgtatcttgtttcgttcataccctgcgtcttgcggggatgacgtttaataatatgtgccgattca 34475405  T
Q  119 aa 120  Q
    ||    
T  34475404 aa 34475403  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 21343682 - 21343771
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||| ||| |||| |||||| |||||||||||||||||||||||||| | |||||  |||||| ||| || ||||||||||||||    
T  21343682 gtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatatt 21343771  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 40023323 - 40023226
Alignment:
Q  11 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||| ||||||||||||| |||| |||||| |||| ||||||||||||||||||||| | |  ||| |||||||||| ||  |||||||||||||    
T  40023323 tttgtttggtggttatggtgtaccgtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgtttaataatatt 40023226  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 9583799 - 9583709
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattg 109  Q
    |||||||||||||  ||| |||||| |||||||||||||||||||||||||  | |||||  |||| ||| | ||||||||||||||||||    
T  9583799 gtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcgtctataccttgtgtcttacggagatggcgtttaataatattg 9583709  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 19176844 - 19176938
Alignment:
Q  22 gttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    |||||||||| |||| |||||| ||||||||||||||| |||||||||| | | |||| |||||| ||  || |||||||||||||| |||||||    
T  19176844 gttatggtgtaccgtctatatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgcaggaatgacgtttaataatatttgccgatt 19176938  T

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Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30352185 - 30352115
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggg 89  Q
    ||||||||||||| || | |||||| |||||||||||||||||||||||||| | |||||| |||||||||    
T  30352185 gtggttatggtgtaccttctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggg 30352115  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 37158660 - 37158735
Alignment:
Q  38 tatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccga 114  Q
    |||||| ||||||||||||||| |||||||||| | |||||| |||||||||| |||||||| |||||||| |||||    
T  37158660 tatatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggcgttt-ataatatttgccga 37158735  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 50559966 - 50560068
Alignment:
Q  6 tgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataat 105  Q
    |||||||||||| ||||||||||||  |||| ||| || |||| | ||||||||||||||||||| |  ||||| | ||||| || || |||||||||||    
T  50559966 tgggttttgtttggtggttatggtgcaccgtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataat 50560065  T
Q  106 att 108  Q
    |||    
T  50560066 att 50560068  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 17551292 - 17551381
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| | || |||||| |||||||||||||| ||||||||| | | || |||||||||| ||| |  ||||||||||||||    
T  17551292 gtggttatggtgtacagtctatatgcggcaccatttgtattttgtttcgttcataccctgcatcttgcagggataacgtttaataatatt 17551381  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 45399120 - 45399209
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||| |||||| ||||||||||||||||| | | ||| || |||| ||| | || ||||||||||||||    
T  45399120 gtggttatggtgtaccgtctatatgcggcaccgtttgtatcttgtttcgttcatacctcgcgtctttcggagatgtcgtttaataatatt 45399209  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 25506827 - 25506709
Alignment:
Q  8 ggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatat 107  Q
    ||||||| |||| ||||||||||| |||| |||||| |||||||||||||| |||||| ||   |  ||||  |||||||||| ||  ||||||||||||    
T  25506827 ggttttgatttggggttatggtgtaccgtctatatgcggcaccatttgtatattgttttgtttatatcttgggtcttgcggggatgatgtttaataatat 25506728  T
Q  108 tggccgattcaaagtaaaa 126  Q
    | | ||||| ||| |||||    
T  25506727 ttgtcgattaaaaataaaa 25506709  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 43012712 - 43012779
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgc 86  Q
    |||||||||||||  ||| |||||| |||||||||||||| ||||||||| | | |||||| ||||||    
T  43012712 gtggttatggtgtatcgtctatatgcggcaccatttgtatattgtttcgttcataccttgcgtcttgc 43012779  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 53248254 - 53248324
Alignment:
Q  38 tatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||| | ||||||||||||||||||| |||| | |||| |  ||||||||| || ||||||||||||||    
T  53248254 tatatgcgacaccatttgtatcttgttttgtccataccttacgccttgcggggatgacgtttaataatatt 53248324  T

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Target: scaffold0172 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 19255 - 19349
Alignment:
Q  21 ggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgat 115  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||| | || ||| ||||||| || || |||||||||||||| ||||||    
T  19255 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatatttgccgat 19349  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 3254318 - 3254389
Alignment:
Q  45 ggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    |||||||||||||||||||||||||| | |||||| |||||||||| || |||||||||||||| |||||||    
T  3254318 ggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 33697854 - 33697792
Alignment:
Q  8 ggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcc 70  Q
    ||||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  33697854 ggttttgatttgtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 33697792  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 10542166 - 10542266
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattca 118  Q
    |||||||||||||  ||| |||||| |||||| ||||||||||||||||| | |  |||||||||||| ||| ||||| |||||||||||  ||||||||    
T  10542166 gtggttatggtgtatcgtctatatgcggcaccttttgtatcttgtttcgttcatatcttgcatcttgc-gggatggcgcttaataatattttccgattca 10542264  T
Q  119 aa 120  Q
    ||    
T  10542265 aa 10542266  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 15944338 - 15944431
Alignment:
Q  23 ttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 116  Q
    ||||||||| |||| |||||| | ||||||||||||||| ||  |||| | |||||| |||| | ||| ||||||||||||||||| |||||||    
T  15944338 ttatggtgtaccgtctatatgcgacaccatttgtatcttcttctgtccataccttgcgtcttacagggatggcgtttaataatatttgccgatt 15944431  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 3117829 - 3117918
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    |||||||||||||  ||| ||||||  |||||||||||||||| |||||||| | |||| | |||||| ||  || ||||||||||||||    
T  3117829 gtggttatggtgtagcgtctatatgctgcaccatttgtatcttatttcgtccataccttacgtcttgcaggaatgacgtttaataatatt 3117918  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 15132560 - 15132485
Alignment:
Q  45 ggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaaa 120  Q
    |||| |||||||||||||||| |||| | |||| | |||||||  | ||||||||||||||||| || ||||||||    
T  15132560 ggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgattcaaa 15132485  T

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Target: scaffold0434 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 2419 - 2348
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcgggg 90  Q
    ||||||||||||| |||| |||||| |||||||| ||||||||||||||||| | |||||| ||||| ||||    
T  2419 gtggttatggtgtaccgtctatatgcggcaccatctgtatcttgtttcgtccataccttgcgtcttgtgggg 2348  T

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Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 48670 - 48759
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||| |||| |  ||||  ||||||||||  | |||| |||||||||    
T  48670 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccatatcttgtgtcttgcggggaggacgttgaataatatt 48759  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 6040 - 6129
Alignment:
Q  19 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 108  Q
    ||||||||| |||  ||| |||||  ||||||||||||||||||| |||| | |  ||||| |||||||||| || ||||||||||||||    
T  6040 gtggttatgatgtaacgtctatatacggcaccatttgtatcttgtctcgttcatatcttgcgtcttgcggggatgacgtttaataatatt 6129  T

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