View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_low_46 (Length: 216)

Name: NF15720_low_46
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_low_46
NF15720_low_46
[»] chr6 (1 HSPs)
chr6 (59-143)||(13099089-13099173)
[»] scaffold0499 (1 HSPs)
scaffold0499 (59-142)||(6022-6105)
[»] chr4 (1 HSPs)
chr4 (59-110)||(28966399-28966450)
[»] chr5 (1 HSPs)
chr5 (61-113)||(27712607-27712659)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 13099089 - 13099173
Alignment:
Q  59 ggttcagcaggcataagagaaagtcaacgaggttgaaagtctccaaggaaagaagagacatagactacgccaccaaaccaccacg 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13099089 ggttcagcaggcacaagagaaagtcaacgaggttgaaagtctcaaaggaaagaagagacaaagactacgccaccaaaccaccacg 13099173  T

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Target: scaffold0499 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 6105 - 6022
Alignment:
Q  59 ggttcagcaggcataagagaaagtcaacgaggttgaaagtctccaaggaaagaagagacatagactacgccaccaaaccaccac 142  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  6105 ggttcaggaggcacaagagcaagtcaacgaggttgaaaatctccaaggaaagaagagacaaagactacgccacgaaaccaccac 6022  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 28966450 - 28966399
Alignment:
Q  59 ggttcagcaggcataagagaaagtcaacgaggttgaaagtctccaaggaaag 110  Q
    |||||||||| || ||||| ||| ||||||||||||||||||||||||||||    
T  28966450 ggttcagcagacacaagagcaagacaacgaggttgaaagtctccaaggaaag 28966399  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 27712659 - 27712607
Alignment:
Q  61 ttcagcaggcataagagaaagtcaacgaggttgaaagtctccaaggaaagaag 113  Q
    ||||||||||| ||||| ||  ||||||||||||||||||| |||||||||||    
T  27712659 ttcagcaggcacaagagcaatacaacgaggttgaaagtctctaaggaaagaag 27712607  T

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