View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_48 (Length: 212)
Name: NF15720_low_48
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 50221446 - 50221261
Alignment:
| Q |
14 |
aagaaaagagaaaataagg--ggattgaa-tgacgtacttgaaagaacaagtgccagagtttctcaaaaggcaatgtaccaggagtcatgaacaaaaaag |
110 |
Q |
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| T |
50221446 |
aagaaaagagaaaataaggattgaatgaagtgacgtacttgaaagaacaagtgccagagtttctcaaaaggcaatgtaccaggagtcatgaacaaaaaag |
50221347 |
T |
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| Q |
111 |
caaccttaggtgtattagtttgaataggaacatagttgagtaaatccttaacaacaacacgagattcaatctctttatcagttaat |
196 |
Q |
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| T |
50221346 |
caaccttaggtgtattagtttgaataggaacatagttgagtaaatccttaacaacaacacgagattcaatctctttatcagttaat |
50221261 |
T |
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