View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_low_5 (Length: 627)

Name: NF15720_low_5
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_low_5
NF15720_low_5
[»] chr3 (5 HSPs)
chr3 (359-611)||(50061179-50061432)
chr3 (346-498)||(50056804-50056954)
chr3 (364-468)||(28095993-28096098)
chr3 (486-560)||(45841587-45841660)
chr3 (488-520)||(27470581-27470613)
[»] scaffold0118 (2 HSPs)
scaffold0118 (346-611)||(18665-18926)
scaffold0118 (348-409)||(18936-18995)
[»] scaffold0245 (1 HSPs)
scaffold0245 (345-499)||(12435-12589)
[»] chr1 (6 HSPs)
chr1 (345-499)||(1286168-1286322)
chr1 (451-611)||(52986415-52986576)
chr1 (486-611)||(2415054-2415180)
chr1 (458-605)||(27203531-27203679)
chr1 (540-605)||(52673224-52673289)
chr1 (377-414)||(2410223-2410260)
[»] chr2 (4 HSPs)
chr2 (346-498)||(38500130-38500283)
chr2 (346-498)||(17508759-17508909)
chr2 (346-498)||(25476376-25476529)
chr2 (486-611)||(41898826-41898952)
[»] chr8 (6 HSPs)
chr8 (346-498)||(44420550-44420700)
chr8 (346-500)||(16985658-16985812)
chr8 (346-498)||(10711880-10712038)
chr8 (468-600)||(1424921-1425052)
chr8 (450-498)||(32749483-32749531)
chr8 (488-533)||(30996884-30996930)
[»] chr4 (3 HSPs)
chr4 (346-498)||(11393060-11393210)
chr4 (346-498)||(11402787-11402937)
chr4 (345-427)||(40361087-40361167)
[»] scaffold0181 (1 HSPs)
scaffold0181 (367-501)||(14385-14521)
[»] scaffold0057 (1 HSPs)
scaffold0057 (469-611)||(29380-29523)
[»] chr6 (1 HSPs)
chr6 (486-611)||(7812634-7812760)
[»] chr7 (3 HSPs)
chr7 (346-430)||(29443615-29443697)
chr7 (438-503)||(39364466-39364531)
chr7 (521-611)||(39895437-39895527)
[»] chr5 (1 HSPs)
chr5 (377-414)||(2737990-2738027)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 4e-86; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 359 - 611
Target Start/End: Complemental strand, 50061432 - 50061179
Alignment:
Q  359 tatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaacgggccaattaca 458  Q
    |||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||  |||||||||| | | |||||||||||||  ||||||||| |    
T  50061432 tatattatatttcagagataaataatgtagaacgactaatgtgtttatataggctattctaacctaatgggcctgactaatgactaataggccaattata 50061333  T
Q  459 aattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaatg-atatctatcattcccagactggaaacaattctttcaa 557  Q
    |||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  50061332 aattactactgataatagtaaaacttcactatttacaacactccccctcaagctggtgaatgaatatctatcattcccagcttggaaacaattctttcaa 50061233  T
Q  558 agtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaag 611  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  50061232 agtttttgttgttcagtcccttagttagaagatctgcaagattgccttgggaag 50061179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 50056954 - 50056804
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 445  Q
    ||||||||||||||||  ||||||| |||||||||||||||| |||||||||||||||||||||||||||  |||||||||| | | ||||||| |||||    
T  50056954 tgtgaaaactgaatat--tatatttcagagataaataatgtacaaccactaatgtgtttatataggctattctaacctaatgggcctgactaataactaa 50056857  T
Q  446 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
      ||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  50056856 taggccaattacaaattactactgataatagtaaaacttcactatttacaaca 50056804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 28095993 - 28096098
Alignment:
Q  364 tatattttagagataaa-taatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaacgggccaattacaaatt 462  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||||| |||||  |||||||||| | | ||||||||||||| |||  |||||||||||    
T  28095993 tatatttcagagataaaataatttacaaccactaatgtgtttatataagctattctaacctaatgggcctgactaatgactaatgggataattacaaatt 28096092  T
Q  463 actaat 468  Q
    ||||||    
T  28096093 actaat 28096098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 45841587 - 45841660
Alignment:
Q  486 actatttacaacacttcccctcaagctggtgaatg-atatctatcattcccagactggaaacaattctttcaaagt 560  Q
    ||||||||||||||| ||||||||| |||||  || |||||||||| ||||||  |||||||||| ||||||||||    
T  45841587 actatttacaacactccccctcaagatggtg--tgaatatctatcactcccagcttggaaacaatcctttcaaagt 45841660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 520
Target Start/End: Complemental strand, 27470613 - 27470581
Alignment:
Q  488 tatttacaacacttcccctcaagctggtgaatg 520  Q
    |||||||||||||||||||||||||| ||||||    
T  27470613 tatttacaacacttcccctcaagctgatgaatg 27470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 113; Significance: 7e-57; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 346 - 611
Target Start/End: Complemental strand, 18926 - 18665
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 445  Q
    ||||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||||||  ||||  ||||| |||| | | |||||||||| ||    
T  18926 tgtgaaaactgaatat--tatattttaga--taaataatgtacaaccactaatgtgtttatataaactattataaccaaatgggcctgactaatgacaaa 18831  T
Q  446 cgggccaattacaaattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaat-gatatctatcattcccagactggaa 544  Q
     || |||||| |||||||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||| ||||||||||||||| |   |||||    
T  18830 tggcccaattgcaaattactaataataatagtaaaacttcaatatttacaacactcccccacaagctggtgaatggatatctatcattccgaacttggaa 18731  T
Q  545 acaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaag 611  Q
    ||||||||||||||| || ||||| | ||||  ||||||||||||| | |||||||||||| |||||    
T  18730 acaattctttcaaagattttgttg-tcagtcttttagttagaagattttcaagattgccttgggaag 18665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 18995 - 18936
Alignment:
Q  348 tgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatata 409  Q
    |||||||| |||||  |||||||||||||||||||||||| ||||| |||||||||||||||    
T  18995 tgaaaactaaatat--tatattttagagataaataatgtacaaccattaatgtgtttatata 18936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 345 - 499
Target Start/End: Original strand, 12435 - 12589
Alignment:
Q  345 gtgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgacta 444  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||   |||||||||| | | ||||||||||||    
T  12435 gtgtgaaaattgaatatattatatttcagagataaataatgtacaaccactaatgtgtttatataggctactctaacctaatgggcctgactaatgacta 12534  T
Q  445 acgggccaattacaaattactaataataatagtaaaactttactatttacaacac 499  Q
    | ||||||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  12535 atgggccaattacaaattactaaaagtaatagtaaaacttcactatttacaacac 12589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 345 - 499
Target Start/End: Original strand, 1286168 - 1286322
Alignment:
Q  345 gtgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgacta 444  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||   |||||||||| | | ||||||||||||    
T  1286168 gtgtgaaaattgaatatattatatttcagagataaataatgtacaaccactaatgtgtttatataggctactctaacctaatgggcctgactaatgacta 1286267  T
Q  445 acgggccaattacaaattactaataataatagtaaaactttactatttacaacac 499  Q
    | ||||||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  1286268 atgggccaattacaaattactaaaagtaatagtaaaacttcactatttacaacac 1286322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 451 - 611
Target Start/End: Complemental strand, 52986576 - 52986415
Alignment:
Q  451 caattacaaattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaa-tgatatctatcattcccagactggaaacaat 549  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||| | |||||||||||||| ||   |||||||||    
T  52986576 caattacaaattactaataataattgtaaaacttcactatttacaacactccccctcaagctagtgaattaatatctatcattcctagctaggaaacaat 52986477  T
Q  550 tctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaag 611  Q
    ||||||||||||   |||||| | | |||||||||||| ||||||||||||||||| |||||    
T  52986476 tctttcaaagttctcgttgttcaataccttagttagaatatctgcaagattgccttgggaag 52986415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 486 - 611
Target Start/End: Complemental strand, 2415180 - 2415054
Alignment:
Q  486 actatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagtta 584  Q
    ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||  ||||||||| | ||||||||||  ||||||| || | ||| ||||    
T  2415180 actatttccaacactccccctcaagctggtgaatgaatatcaatcattcccagcttggaaacaaatttttcaaagttattgttgttcagcctctttgtta 2415081  T
Q  585 gaagatctgcaagattgccttaggaag 611  Q
    ||||||||||||| ||| ||| |||||    
T  2415080 gaagatctgcaaggttgtcttgggaag 2415054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 605
Target Start/End: Original strand, 27203531 - 27203679
Alignment:
Q  458 aaattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaatg-atatctatcattcccagactggaaacaattctttca 556  Q
    ||||||||| || ||||| ||||| |  | ||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||  |||||    
T  27203531 aaattactactactaataataaaaatacattatttacaacacttctcctcaagctggtgaatgaatatctatcattcccagcttggaaacaatcatttca 27203630  T
Q  557 aagtttatgttgtttagtcccttagttagaagatctgcaagattgcctt 605  Q
    ||| |  || || | || ||||||| ||||||||| ||||| |||||||    
T  27203631 aagctattgctggtcagccccttaggtagaagatcagcaaggttgcctt 27203679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 540 - 605
Target Start/End: Original strand, 52673224 - 52673289
Alignment:
Q  540 tggaaacaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgcctt 605  Q
    |||||||||| ||||||||||| ||| |||| || |||||||| |||||||||||| | |||||||    
T  52673224 tggaaacaatactttcaaagttgatgctgttcagccccttagtcagaagatctgcatggttgcctt 52673289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 2410260 - 2410223
Alignment:
Q  377 taaataatgtataaccactaatgtgtttatataggcta 414  Q
    |||||||| || ||||||||||||||||||||||||||    
T  2410260 taaataatttacaaccactaatgtgtttatataggcta 2410223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 38500283 - 38500130
Alignment:
Q  346 tgtgaaaactgaatatactatattttaga---gataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgac 442  Q
    ||||||||||||||||  ||||||| |||   ||||||||||||| |||||||||||||||||||||||||||  |||||||||| | | ||||||||||    
T  38500283 tgtgaaaactgaatat--tatatttcagacgagataaataatgtacaaccactaatgtgtttatataggctattctaacctaatgggcctgactaatgac 38500186  T
Q  443 taacgggccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38500185 taataggccaattacaaattactaataataatagtaaaacttcactatttacaaca 38500130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 17508909 - 17508759
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 445  Q
    |||||||| |||||||  ||||||| ||| |||||||||||| |||||||||||||||||||||||||||   ||||||||  | | |||||||||||||    
T  17508909 tgtgaaaattgaatat--tatatttcagaaataaataatgtacaaccactaatgtgtttatataggctattcgaacctaataggcctgactaatgactaa 17508812  T
Q  446 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17508811 tgggccaattacaaattactaataataatagtaaaacttcactatttacaaca 17508759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 346 - 498
Target Start/End: Original strand, 25476376 - 25476529
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 445  Q
    ||||||||||||| ||  ||||||| | ||||||||||| || |||||||||||||||| ||| |||| | ||||||||||| | | |||||||| ||||    
T  25476376 tgtgaaaactgaagat--tatatttcaaagataaataatttacaaccactaatgtgtttctatgggctgttttaacctaatgggcctgactaatggctaa 25476473  T
Q  446 cgggccaattacaaattactaataataa---tagtaaaactttactatttacaaca 498  Q
     | || ||||| ||||||||||||||||   ||||||||||| |||||| ||||||    
T  25476474 tgagctaattagaaattactaataataatagtagtaaaacttcactattcacaaca 25476529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 486 - 611
Target Start/End: Complemental strand, 41898952 - 41898826
Alignment:
Q  486 actatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagtta 584  Q
    ||||||| ||||||  |||||||||||||||||||| |||| ||||||||||   |||||||||   ||||||||||  ||||||| || ||||| ||||    
T  41898952 actatttccaacaccccccctcaagctggtgaatgaatatcaatcattcccaatttggaaacaaacttttcaaagttattgttgttcagcccctttgtta 41898853  T
Q  585 gaagatctgcaagattgccttaggaag 611  Q
    ||||||||||||| ||||||| |||||    
T  41898852 gaagatctgcaaggttgccttgggaag 41898826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 9e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 44420700 - 44420550
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 445  Q
    ||||||||||||||||  ||||||| |||||||||| || || |||||||||||||||||||||||||||  |||||| ||| | | ||| |||||||||    
T  44420700 tgtgaaaactgaatat--tatatttcagagataaatgatatacaaccactaatgtgtttatataggctattctaaccttatgggcctgaccaatgactaa 44420603  T
Q  446 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
     |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  44420602 tgggccaattacaaattactaataataatagtaaaacttcactatttataaca 44420550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 346 - 500
Target Start/End: Original strand, 16985658 - 16985812
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaat--gtgtttatataggctatcttaacctaatgagtcc-gactaatgac 442  Q
    ||||||||||||||||  ||||||| |||||||||||||||| ||||||||||  ||||||||| |||||||  |||||||||| |||| ||||||||||    
T  16985658 tgtgaaaactgaatat--tatatttcagagataaataatgtacaaccactaatatgtgtttataaaggctattctaacctaatg-gtcctgactaatgac 16985754  T
Q  443 taacgggccaattacaaattactaataataatagtaaaactttactatttacaacact 500  Q
    ||| ||||||||||||||||| |||||||||||||||||| | | |||||||| ||||    
T  16985755 taatgggccaattacaaattattaataataatagtaaaacatcattatttacagcact 16985812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 10712038 - 10711880
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaa-taatgtataaccactaatgtgtttatataggctat---ct----taacctaatgagtccgacta 437  Q
    ||||||||||||||||  ||||| | ||||||||| ||||||||| |||||||||| ||||||||||||||   ||    |||||||||| | |  ||||    
T  10712038 tgtgaaaactgaatat--tatatgtcagagataaaataatgtatatccactaatgtatttatataggctataggctattctaacctaatgggcctaacta 10711941  T
Q  438 atgactaacgggccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
    |||||||| |||| ||||||||||||||||||||||| |||||| || |||||||||||||    
T  10711940 atgactaatgggctaattacaaattactaataataattgtaaaaattcactatttacaaca 10711880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 600
Target Start/End: Complemental strand, 1425052 - 1424921
Alignment:
Q  468 taataatagtaaaactttactatttacaacacttcccctcaagctggtgaatgatatctatcattcccagactggaaacaattctttcaaagtttatgtt 567  Q
    |||||||| ||||| || ||||||||||||||| | |||||||||||| || ||||||||| ||| ||||  || ||  |||||| |  || ||  ||||    
T  1425052 taataatattaaaatttcactatttacaacactccacctcaagctggt-aaagatatctattattaccagcttgaaaggaattctctttaaattcttgtt 1424954  T
Q  568 gtttagtcccttagttagaagatctgcaagatt 600  Q
    ||| |||| |||||||||||||||||| |||||    
T  1424953 gttcagtctcttagttagaagatctgctagatt 1424921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 32749531 - 32749483
Alignment:
Q  450 ccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||    
T  32749531 ccaattacaaattactaataataatagtaaaatttcattatttacaaca 32749483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 30996930 - 30996884
Alignment:
Q  488 tatttacaacacttcccctcaagctggtgaat-gatatctatcattc 533  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30996930 tatttacaacacttcctctcaagctggtgaatggatatctatcattc 30996884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 11393210 - 11393060
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 445  Q
    |||||||||| |||||  ||||||| |||||||||||||||| ||||||| |||||||||||||||||||  ||| |||||| | | |||||||||||||    
T  11393210 tgtgaaaacttaatat--tatatttcagagataaataatgtacaaccactgatgtgtttatataggctattctaagctaatgggcctgactaatgactaa 11393113  T
Q  446 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
     | | ||||||||||||||||||||||||  |||||||| | |||||||||||    
T  11393112 tgagacaattacaaattactaataataatcataaaacttcattatttacaaca 11393060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 11402937 - 11402787
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 445  Q
    |||||||||| |||||  ||||||| |||||||||||||||| ||||||| |||||||||||||||||||  ||| |||||| | | |||||||||||||    
T  11402937 tgtgaaaacttaatat--tatatttcagagataaataatgtacaaccactgatgtgtttatataggctattctaagctaatgggcctgactaatgactaa 11402840  T
Q  446 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 498  Q
     | | ||||||||||||||||||||||||  |||||||| | |||||||||||    
T  11402839 tgagacaattacaaattactaataataatcataaaacttcattatttacaaca 11402787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 427
Target Start/End: Original strand, 40361087 - 40361167
Alignment:
Q  345 gtgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatg 427  Q
    |||||||||||||||||  |||| || ||||||| |  ||||| || |||||||||| |||||||||||||  ||||||||||    
T  40361087 gtgtgaaaactgaatat--tatacttcagagatataatatgtacaatcactaatgtgcttatataggctattctaacctaatg 40361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 367 - 501
Target Start/End: Complemental strand, 14521 - 14385
Alignment:
Q  367 attttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaacgggccaattacaaattacta 466  Q
    |||| ||| |||||||||||| |||||||||| | ||||| ||| ||||  || ||||||| |||  |||||||||||| ||||  ||||||||||||||    
T  14521 atttcagaaataaataatgtacaaccactaatatttttatgtagactattctagcctaatg-gtctaactaatgactaaagggcttattacaaattacta 14423  T
Q  467 ataat---aatagtaaaactttactatttacaacactt 501  Q
    |||||   ||||||||||||| ||||||| ||||||||    
T  14422 ataataataatagtaaaacttcactatttccaacactt 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 469 - 611
Target Start/End: Complemental strand, 29523 - 29380
Alignment:
Q  469 aataatagtaaaactttactatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgtt 567  Q
    ||||||| ||||| | || |||| |||||||| ||||||||||| |||||||| |||||||||||| |||  || ||||||||||||| || ||  ||||    
T  29523 aataataataaaaatatattattcacaacactccccctcaagcttgtgaatgagtatctatcattcacagcttgaaaacaattctttccaatttattgtt 29424  T
Q  568 gtttagtcccttagttagaagatctgcaagattgccttaggaag 611  Q
    ||| |  || |||||| ||||||||||||| ||||||| |||||    
T  29423 gttcaacccattagttggaagatctgcaaggttgccttgggaag 29380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 486 - 611
Target Start/End: Original strand, 7812634 - 7812760
Alignment:
Q  486 actatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagtta 584  Q
    ||||||||||| ||| ||| |||||||||||||||| |||| ||| ||||||   ||||||||| | ||||||||||  | ||||| |  ||||| ||||    
T  7812634 actatttacaatactccccgtcaagctggtgaatgaatatcaatctttcccatcatggaaacaaatttttcaaagttattattgttcaacccctttgtta 7812733  T
Q  585 gaagatctgcaagattgccttaggaag 611  Q
    ||||||||||||| ||||||| |||||    
T  7812734 gaagatctgcaaggttgccttgggaag 7812760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 346 - 430
Target Start/End: Original strand, 29443615 - 29443697
Alignment:
Q  346 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagt 430  Q
    ||||||||||||||||  ||||||| |  |||||||||| || |||||||||||||||||||||| ||||  |||||||||||||    
T  29443615 tgtgaaaactgaatat--tatatttcactgataaataatatacaaccactaatgtgtttatatagactattctaacctaatgagt 29443697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 39364466 - 39364531
Alignment:
Q  438 atgactaacgggccaattacaaattactaataataatagtaaaactttactatttacaacacttcc 503  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||| | | ||||||||| ||||    
T  39364466 atgactaatggaccaattagaaattactaataataatagtaaaacttcattgtttacaacatttcc 39364531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 611
Target Start/End: Complemental strand, 39895527 - 39895437
Alignment:
Q  521 atatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaag 611  Q
    ||||||||| ||||||   |||||||||||||||||||| |  ||||||| || ||||| ||||| | ||||||||| |||||||| ||||    
T  39895527 atatctatcgttcccaacttggaaacaattctttcaaagctattgttgttcagccccttggttagtaaatctgcaaggttgccttaagaag 39895437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 2737990 - 2738027
Alignment:
Q  377 taaataatgtataaccactaatgtgtttatataggcta 414  Q
    |||||||| || ||||||||||||||||||||||||||    
T  2737990 taaataatttacaaccactaatgtgtttatataggcta 2738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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