View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_6 (Length: 585)
Name: NF15720_low_6
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 14 - 567
Target Start/End: Original strand, 51846749 - 51847307
Alignment:
| Q |
14 |
gcaaaggtggaagaaagtgactttttgtgttactttgtcagataacannnnnnnc----ccaggataacatatgataaatgagattggtctcataactta |
109 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |
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| T |
51846749 |
gcaaaggtgggagaaagtgactttttgtgttactttgtcagataacattttttttttttctaggataacatatgataaatgagattggtctcataaccta |
51846848 |
T |
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| Q |
110 |
gttgatggtaggtgtttatcatgttcttactcaaattgtgacaacatttggatgacattgtggcgttaatatcatgtgacattggccaaccacaatgtgc |
209 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
51846849 |
gttgatgctaggtgtttatcatgttcttattcaaattgtgacaacatttggatgacattgtggcgttaatatcatgtgacattgaccaaccacaatgtac |
51846948 |
T |
|
| Q |
210 |
catataaccctaaataaactcttcgattgaattttgatatgatgacgacaggtatcaacggtttcgtcatcgcgcattacattttatatagttat-aatc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
51846949 |
catataaccctaaataaactcttcgattgaattttgatatgatgacgacagatagcaacggtttcatcattgcgcattacattttatatagttatcaatc |
51847048 |
T |
|
| Q |
309 |
cttcaaatcttacaatatagataacaattttttgttattattctcaactttgttttctatatcattggtttgactcacaacagttgttatgttatcattg |
408 |
Q |
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| T |
51847049 |
cttcaaatcttacaatatagataacaattttttgttattattctcaactttgttttctatatcattggtttgactcacaacagttgttatgttatcattg |
51847148 |
T |
|
| Q |
409 |
ccctcatcttgtcatcaattaaggcaccagtttcaattctagctccgtacaaagactctttgcatcagattttagaaaagaccactacccttttgcttct |
508 |
Q |
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| T |
51847149 |
ccctcatcttttcatcaattaaggcaccagtttcaattctagctccgtacaaagactctttgcatcagattttagaaaagaccactacccttttgcttct |
51847248 |
T |
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| Q |
509 |
ttcacaccagtagatgacttgaggaaattggcatgcttaaagagtttagagataaggtt |
567 |
Q |
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| T |
51847249 |
ttcacaccagtggatgacttgaggaaattggcatgcttaaagagtttagagataaggtt |
51847307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 50194052 - 50193998
Alignment:
| Q |
154 |
catttggatgacattgtggcgttaatatcatgtgacattggccaaccacaatgtg |
208 |
Q |
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| T |
50194052 |
catttggatgacattgtggtttcaatttcatgtgacattggtcaaccacaatgtg |
50193998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 26961002 - 26960947
Alignment:
| Q |
152 |
aacatttggatgacattgtggcgttaatatcatgtgacattggccaaccacaatgt |
207 |
Q |
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| T |
26961002 |
aacacttgggtgacattgaggtgtcaatgtcatgtgacattggccaaccacaatgt |
26960947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 532163 - 532222
Alignment:
| Q |
149 |
gacaacatttggatgacattgtggcgttaatatcatgtgacattggccaaccacaatgtg |
208 |
Q |
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| T |
532163 |
gacaacacttgggtgacatggtggtgccaatgtcatgtgacattggccaaccacaatgtg |
532222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 33020118 - 33020164
Alignment:
| Q |
159 |
ggatgacattgtggcgttaatatcatgtgacattggccaaccacaat |
205 |
Q |
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| T |
33020118 |
ggatgacattgtggtgtcaatgtcatgtgacattggacaaccacaat |
33020164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 13837850 - 13837896
Alignment:
| Q |
162 |
tgacattgtggcgttaatatcatgtgacattggccaaccacaatgtg |
208 |
Q |
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| T |
13837850 |
tgacattgtggtgccaatgtcatgtgacattggccaaccacaatgtg |
13837896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 42494931 - 42494879
Alignment:
| Q |
155 |
atttggatgacattgtggcgttaatatcatgtgacattggccaaccacaatgt |
207 |
Q |
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| T |
42494931 |
atttgggtgacattgtggtgccaatgtcatgtgacattggtcaaccacaatgt |
42494879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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