View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_7 (Length: 553)
Name: NF15720_low_7
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 41704899 - 41705436
Alignment:
| Q |
1 |
agggtgaagaccacttgcacactcaagtgctcgatttgtgtcaacatgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaaga |
100 |
Q |
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| T |
41704899 |
agggtgaagaccacttgcacactcaagtgctcgatttgtgtcaacttgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaaga |
41704998 |
T |
|
| Q |
101 |
ggagaaaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgctta |
200 |
Q |
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| T |
41704999 |
ggagaaaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgctta |
41705098 |
T |
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| Q |
201 |
ccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaagacatgattcttagtacaacataggaact |
300 |
Q |
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| T |
41705099 |
ccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaagacatgactcttagtacaacataggaact |
41705198 |
T |
|
| Q |
301 |
gccattgagagtgtcaaagtaaagcttttgagaatgaggatcgcaacgaagtctatagaatggatcgccacagtttggttctgtgctcaaaggatatgga |
400 |
Q |
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| T |
41705199 |
gccattgagagtgtcaaagtaaagcttttgagaatgaggatcacaacgaagtctatagaatggatcgccacagtttggttctgtgctcaaaggatatgga |
41705298 |
T |
|
| Q |
401 |
actttcatagaaccacagtttggacaagtcttttgtgaacaagtatagtgacagaggaaaaggcaaagaaaaaaggcatagctaaaatgaaaacaatgtc |
500 |
Q |
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| T |
41705299 |
actttcatagaaccacagtttggacaagtcttttgtgaacaagtatagtgacagaggaaaaggcaaagaaaaaaggcatagctaaaatgaaaacaatgtc |
41705398 |
T |
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| Q |
501 |
tcctagttgattcaataatcattttgcatggataatta |
538 |
Q |
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| T |
41705399 |
tcctagttgattcaataatcattttgcatggataatta |
41705436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 1453265 - 1453360
Alignment:
| Q |
176 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaa |
271 |
Q |
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| T |
1453265 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccatgcgttggatcgaa |
1453360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 1464957 - 1465052
Alignment:
| Q |
176 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaa |
271 |
Q |
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| T |
1464957 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccatgcgttggatcgaa |
1465052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 1441065 - 1441132
Alignment:
| Q |
426 |
aagtcttttgtgaacaagtatagtgacagaggaaaaggcaaagaaaaaaggcatagctaaaatgaaaa |
493 |
Q |
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| T |
1441065 |
aagtcttttgtgaacaagaataatgacaaaggaaaagacacagaagaaaggcatagctaaaataaaaa |
1441132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 1441012 - 1441050
Alignment:
| Q |
360 |
atggatcgccacagtttggttctgtgctcaaaggatatg |
398 |
Q |
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| T |
1441012 |
atggatcgccacaatttggttctgtgctcaaaggatatg |
1441050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 7564110 - 7564146
Alignment:
| Q |
203 |
ggcatgtcttgtgtgacacatgaaccgggtaaccaag |
239 |
Q |
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| T |
7564110 |
ggcatgtcttgtgtaacacatgaaccaggtaaccaag |
7564146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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