View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_low_8 (Length: 544)
Name: NF15720_low_8
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 161 - 528
Target Start/End: Complemental strand, 34786106 - 34785739
Alignment:
| Q |
161 |
cattttgttctcagagaaatgacctctggtaatccagaattcggccagaaggtaagtaaagtctgaccaaagtgattgttttagctagaggtcgaacgcg |
260 |
Q |
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| T |
34786106 |
cattttgttctcagagaaatgaactctggtaatccagaattcggccagaaggtaagtaaagtctgaccaaagtgattgttttagctagaggtcaaactcg |
34786007 |
T |
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| Q |
261 |
actacactcttgatcagttccaccttagcggaatctcattaactgcttaagttcaaccacttaagtagctagtaagtatgaagaaataatatatttgttt |
360 |
Q |
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| T |
34786006 |
actacactcttgatcagttcgaccttagcggaatctcattaactacttaagttcaaccacttaagtagctagtaagtatgaagaaataatatatttgttt |
34785907 |
T |
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| Q |
361 |
gtatgtatgtatgtatgaaacgaccttacttaaacatgatctgatttataaaatcgtactaccgtatgtgtctttgatttcttaggtgacggaaagtaag |
460 |
Q |
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| T |
34785906 |
gtatgtatgtatgtatgaaacgaccttacttaaacatgatctgatttataaaatcgtactaccgtatgtatctttgatttcttaggcgacggaaagtaag |
34785807 |
T |
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| Q |
461 |
atgtatctgttgaaaatgataaatatgtagtaggctttgaatcttaccactaacagcaatgctatagc |
528 |
Q |
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| T |
34785806 |
atgtatctgttgaaaatgataaatatgtagtaggctttgaatcttaccactaacagcaatgctatagc |
34785739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 34786226 - 34786105
Alignment:
| Q |
13 |
atgcaggttctttaactgcgcttgggttgttaccctcagtgcctactccagacaatatatatgtcttcctgtttaatcccaacagataagaagcaaatcc |
112 |
Q |
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| T |
34786226 |
atgcaggttctttaactgcgcttgggttgttaccctcagtgcctactccagacaatatatatgtcttcctgtttaatcccaacagataagaagcaaatcc |
34786127 |
T |
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| Q |
113 |
tcctgcaacaaacacaagcaca |
134 |
Q |
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| T |
34786126 |
tcctgcaacaaacacaagcaca |
34786105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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