View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15721_high_2 (Length: 294)

Name: NF15721_high_2
Description: NF15721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15721_high_2
NF15721_high_2
[»] chr5 (5 HSPs)
chr5 (24-122)||(10430963-10431061)
chr5 (163-204)||(10430879-10430920)
chr5 (37-113)||(2292069-2292145)
chr5 (46-105)||(9931959-9932018)
chr5 (37-103)||(23173124-23173191)
[»] chr7 (6 HSPs)
chr7 (39-110)||(30655752-30655823)
chr7 (39-106)||(49036007-49036073)
chr7 (40-116)||(41702782-41702858)
chr7 (36-105)||(1039215-1039283)
chr7 (41-105)||(33320617-33320682)
chr7 (45-118)||(31424936-31425009)
[»] chr1 (5 HSPs)
chr1 (38-116)||(19472702-19472780)
chr1 (41-104)||(26384877-26384940)
chr1 (36-106)||(30465163-30465233)
chr1 (46-92)||(31833817-31833863)
chr1 (40-104)||(38548593-38548657)
[»] chr8 (7 HSPs)
chr8 (39-106)||(19449943-19450010)
chr8 (40-110)||(5200633-5200703)
chr8 (37-113)||(10124767-10124843)
chr8 (39-106)||(19531066-19531133)
chr8 (37-103)||(25829416-25829483)
chr8 (39-106)||(40930980-40931047)
chr8 (37-103)||(24200768-24200834)
[»] chr3 (4 HSPs)
chr3 (40-103)||(20701076-20701139)
chr3 (49-102)||(8431585-8431638)
chr3 (40-104)||(55166971-55167035)
chr3 (37-108)||(52075971-52076042)
[»] chr6 (4 HSPs)
chr6 (43-104)||(11546683-11546744)
chr6 (61-103)||(33984672-33984714)
chr6 (46-104)||(34761078-34761136)
chr6 (40-104)||(33112867-33112931)
[»] chr4 (1 HSPs)
chr4 (51-100)||(25641427-25641476)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 10431061 - 10430963
Alignment:
Q  24 ccacccctggataaaccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagacagccgaacctgct 122  Q
    |||||||| ||||||||||||||||||||| |||| | |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  10431061 ccacccctagataaaccaaaagagtaatgatgcaggcgtatacaaatgacaaacaaaaagcatacccctgcatcaacacgaaagacagccgaacctgct 10430963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 10430920 - 10430879
Alignment:
Q  163 gccccaaccgggctgcacaacaccgcaacaaacccagccccc 204  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  10430920 gccccaactgggctgcacaacaccgcaacaaacccagccccc 10430879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 2292145 - 2292069
Alignment:
Q  37 aaccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagacagcc 113  Q
    |||| ||||||||||||||| |  ||||||| ||||||||||  | ||||||||||||||||||||| || ||||||    
T  2292145 aacccaaagagtaatgacgcgggaatatacatatgacaaaccgcatgcatacccctgcgtcaacacctaaaacagcc 2292069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 9931959 - 9932018
Alignment:
Q  46 agtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaa 105  Q
    ||||||||||| |||||||||| || ||||| || | |||||| ||||||||||||||||    
T  9931959 agtaatgacgccgacatatacatataacaaaacacatgcatactcctgcgtcaacaccaa 9932018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 23173124 - 23173191
Alignment:
Q  37 aaccaaaagagtaatgacgcagacatatacaaatgaca-aaccaaaagcatacccctgcgtcaacacc 103  Q
    |||||| ||||||||||||||  |||||||  |||||| ||||| |||||||||||||| ||||||||    
T  23173124 aaccaatagagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 23173191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 30655752 - 30655823
Alignment:
Q  39 ccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagaca 110  Q
    |||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  30655752 ccaaaagagtaatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacaccaaagaca 30655823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 49036007 - 49036073
Alignment:
Q  39 ccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaa 106  Q
    |||||| ||||| ||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||    
T  49036007 ccaaaaaagtaacgacgcag-catatacatatgacaaaccacatgcatacccctgcgtcaacaccaaa 49036073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 41702858 - 41702782
Alignment:
Q  40 caaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagacagccgaa 116  Q
    |||||||| | |||||||| |||| ||| ||||||||||| | |||||||| ||| ||||||||||||||| |||||    
T  41702858 caaaagagaattgacgcaggcataaacatatgacaaaccacatgcatacccttgcatcaacaccaaagacatccgaa 41702782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 1039215 - 1039283
Alignment:
Q  36 aaaccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaa 105  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||| | ||||||| | ||||||| |||||    
T  1039215 aaaccaaaagagtaatgacgccgacatatacatatgac-aaccacatgcatacctccgcgtcaataccaa 1039283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 33320682 - 33320617
Alignment:
Q  41 aaaagagtaatgacgcagacatatacaaatgac-aaaccaaaagcatacccctgcgtcaacaccaa 105  Q
    ||||||||||||||||| |||||||| ||||||  ||||| ||| ||| |||||||||||||||||    
T  33320682 aaaagagtaatgacgcaaacatataccaatgacttaaccacaagaatagccctgcgtcaacaccaa 33320617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 31424936 - 31425009
Alignment:
Q  45 gagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagacagccgaacc 118  Q
    |||||||||||| | | ||||| | |||||  ||| ||||||||||| |||||||||||||||| |||| ||||    
T  31424936 gagtaatgacgctggcgtataccagtgacagtccacaagcataccccagcgtcaacaccaaagatagccaaacc 31425009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 19472780 - 19472702
Alignment:
Q  38 accaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagacagccgaa 116  Q
    |||| |||||||||||||||| ||||||||| ||||| |||| |||||||||||||| |||||||||||| | ||||||    
T  19472780 accacaagagtaatgacgcaggcatatacaagtgacagaccacaagcatacccctgcatcaacaccaaaggccgccgaa 19472702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 26384940 - 26384877
Alignment:
Q  41 aaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacca 104  Q
    |||||||||||||||||| |||||||| ||||||||||| | | |||||| | |||||||||||    
T  26384940 aaaagagtaatgacgcaggcatatacatatgacaaaccacatgaatacccttacgtcaacacca 26384877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 30465163 - 30465233
Alignment:
Q  36 aaaccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaa 106  Q
    ||||||||||||| |||| | || |||||||  ||||||||||| |||||||||| ||||||| |||||||    
T  30465163 aaaccaaaagagtgatgatgaaggcatatacctatgacaaaccacaagcatacccttgcgtcaccaccaaa 30465233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 31833863 - 31833817
Alignment:
Q  46 agtaatgacgcagacatatacaaatgacaaaccaaaagcatacccct 92  Q
    |||||||||||||||||||||||||| ||| ||  ||||||||||||    
T  31833863 agtaatgacgcagacatatacaaatggcaatccgcaagcatacccct 31833817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 38548657 - 38548593
Alignment:
Q  40 caaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacca 104  Q
    ||||||||||||| ||||| |||||||| |||||||||||   |||||| | |||| ||||||||    
T  38548657 caaaagagtaatgtcgcaggcatatacatatgacaaaccacgtgcatactcgtgcgacaacacca 38548593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 19449943 - 19450010
Alignment:
Q  39 ccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaa 106  Q
    |||||||||||||||||||| ||||||||||| ||||| || | ||| ||||||||||||| ||||||    
T  19449943 ccaaaagagtaatgacgcaggcatatacaaataacaaaacacatgcagacccctgcgtcaaaaccaaa 19450010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 5200633 - 5200703
Alignment:
Q  40 caaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagaca 110  Q
    ||||||||||||||||||| ||||| | |||||||||||| |||||||||| | |||||||| ||| ||||    
T  5200633 caaaagagtaatgacgcaggcatatgcgaatgacaaaccagaagcatacccttacgtcaacatcaaggaca 5200703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10124843 - 10124767
Alignment:
Q  37 aaccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaagacagcc 113  Q
    |||| ||||||||||||||| |  ||||||| |||||| |||| | ||||||||||||| |||||||||| ||||||    
T  10124843 aacccaaagagtaatgacgcgggaatatacatatgacataccacatgcatacccctgcgccaacaccaaaaacagcc 10124767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 19531133 - 19531066
Alignment:
Q  39 ccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaa 106  Q
    |||||||||||||||| ||| ||||||||||| ||||| || | ||| ||||||||||||| ||||||    
T  19531133 ccaaaagagtaatgacccaggcatatacaaataacaaaacacatgcagacccctgcgtcaaaaccaaa 19531066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 25829416 - 25829483
Alignment:
Q  37 aaccaaaagagtaatgacgcagacatatacaaatgaca-aaccaaaagcatacccctgcgtcaacacc 103  Q
    |||||||||||||||||||||  |||||||  |||||| ||||| |||||||||||||| ||||||||    
T  25829416 aaccaaaagagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 25829483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 40930980 - 40931047
Alignment:
Q  39 ccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaa 106  Q
    |||||||||| ||||||||| |||||||| ||||| ||||  | ||||| ||||||||||||||||||    
T  40930980 ccaaaagagttatgacgcaggcatatacatatgacgaaccgcatgcatagccctgcgtcaacaccaaa 40931047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 24200768 - 24200834
Alignment:
Q  37 aaccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacc 103  Q
    ||||||||||||||||||||  | |||||||||||||| |||| ||  ||||||| |||||||||||    
T  24200768 aaccaaaagagtaatgacgccaatatatacaaatgacacaccataaatatacccccgcgtcaacacc 24200834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 20701139 - 20701076
Alignment:
Q  40 caaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacc 103  Q
    |||||||||||||| ||||||||||||| |||||  |||| | |||||||||||||||||||||    
T  20701139 caaaagagtaatgatgcagacatatacatatgacggaccacacgcatacccctgcgtcaacacc 20701076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 8431585 - 8431638
Alignment:
Q  49 aatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacac 102  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||| |||||||    
T  8431585 aatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 8431638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 55166971 - 55167035
Alignment:
Q  40 caaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacca 104  Q
    ||||||||||||| ||||| |||||||| ||||||||||| | |||||| | |||| ||||||||    
T  55166971 caaaagagtaatgtcgcaggcatatacatatgacaaaccacatgcatactcgtgcgacaacacca 55167035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 52076042 - 52075971
Alignment:
Q  37 aaccaaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacaccaaaga 108  Q
    ||||||||||||| |||||||  ||||||||| || |||  || | |||||||| |||||||||||||||||    
T  52076042 aaccaaaagagtattgacgcatgcatatacaattggcaatacacatgcatacccttgcgtcaacaccaaaga 52075971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 11546744 - 11546683
Alignment:
Q  43 aagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacca 104  Q
    ||||||||||||||||||||||||| ||||||| ||  | | ||||||||||||||||||||    
T  11546744 aagagtaatgacgcagacatatacatatgacaatcctcatgaatacccctgcgtcaacacca 11546683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 33984714 - 33984672
Alignment:
Q  61 atatacaaatgacaaaccaaaagcatacccctgcgtcaacacc 103  Q
    |||||||||||||| |||| | |||||||||||||||||||||    
T  33984714 atatacaaatgacacaccacatgcatacccctgcgtcaacacc 33984672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 34761136 - 34761078
Alignment:
Q  46 agtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacca 104  Q
    ||||||||||||| |||||||| ||||||| ||  | | ||||||||||||||||||||    
T  34761136 agtaatgacgcaggcatatacatatgacaatcctcatgaatacccctgcgtcaacacca 34761078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 33112867 - 33112931
Alignment:
Q  40 caaaagagtaatgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaacacca 104  Q
    ||||||||||||| ||||| |||||||| |||||||||||   |||||| | |||| ||||||||    
T  33112867 caaaagagtaatgtcgcaggcatatacatatgacaaaccacgtgcatactcgtgcgacaacacca 33112931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 25641427 - 25641476
Alignment:
Q  51 tgacgcagacatatacaaatgacaaaccaaaagcatacccctgcgtcaac 100  Q
    |||||| | ||||||||||||||| |||| | ||||||||||||||||||    
T  25641427 tgacgccggcatatacaaatgacagaccacatgcatacccctgcgtcaac 25641476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University