View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15721_low_2 (Length: 305)
Name: NF15721_low_2
Description: NF15721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15721_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 4756938 - 4756659
Alignment:
| Q |
9 |
gaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttca |
108 |
Q |
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| T |
4756938 |
gaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttca |
4756839 |
T |
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| Q |
109 |
cagcactatcctcaatgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttga |
208 |
Q |
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| T |
4756838 |
cagcactatcctcaatgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttga |
4756739 |
T |
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| Q |
209 |
gattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggtta |
288 |
Q |
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| T |
4756738 |
gattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggtta |
4756659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 4749086 - 4748878
Alignment:
| Q |
23 |
agtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctca |
122 |
Q |
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| T |
4749086 |
agtgatgacatcaaaagtgaactttttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttct |
4748987 |
T |
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| Q |
123 |
atgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatg |
222 |
Q |
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| T |
4748986 |
atgagaccaatataattgtacaa---ttcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatg |
4748890 |
T |
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| Q |
223 |
atcttttacctg |
234 |
Q |
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| T |
4748889 |
attttttccctg |
4748878 |
T |
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