View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15721_low_5 (Length: 264)
Name: NF15721_low_5
Description: NF15721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15721_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 41956950 - 41956773
Alignment:
| Q |
77 |
tatgattttactctactattctcttcatttttt-cttatgctgcttagtgtcgattttgaggaaaaatatcatgtaagcattttccaacacaggcaatgt |
175 |
Q |
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| T |
41956950 |
tatgattttactctactattctctttatttttttcttatgctgcttagtgtcgattttgaggaaaaatatcatgtaagcattttccaacacaggcaatgt |
41956851 |
T |
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| Q |
176 |
tcaacacgttaaaaacgaaagaagcaattagccattttaagatggaaaagtgtgaacaaaggaaatatattttaaaga |
253 |
Q |
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| T |
41956850 |
tcaacacgttaaaaacgaaagtagcaattagccattttaagatggaaaagtgtgaacaaaggaaatatattttaaaga |
41956773 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41957065 - 41956985
Alignment:
| Q |
1 |
agaacctacctacctacctttggtccaaacattagtagggaggatgagtttgaagtgggataggatgagtaaattttatga |
81 |
Q |
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| T |
41957065 |
agaacctacctacctacctttggtccaaacattagtagggaggatgagtttgaagtgggataggatgagtaaattttatga |
41956985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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