View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15722_high_1 (Length: 330)

Name: NF15722_high_1
Description: NF15722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15722_high_1
NF15722_high_1
[»] chr2 (6 HSPs)
chr2 (17-182)||(14662137-14662296)
chr2 (17-113)||(14645912-14646008)
chr2 (216-312)||(14662328-14662421)
chr2 (129-167)||(14646408-14646446)
chr2 (216-278)||(45338572-45338634)
chr2 (216-278)||(45336260-45336322)
[»] chr3 (5 HSPs)
chr3 (216-312)||(48027345-48027438)
chr3 (216-278)||(48024085-48024147)
chr3 (216-278)||(48025196-48025258)
chr3 (216-278)||(48024636-48024698)
chr3 (216-278)||(28784514-28784576)
[»] chr7 (2 HSPs)
chr7 (216-278)||(13108908-13108970)
chr7 (216-278)||(13111201-13111263)
[»] chr6 (1 HSPs)
chr6 (216-278)||(6723461-6723523)
[»] chr5 (2 HSPs)
chr5 (216-278)||(32798007-32798069)
chr5 (216-278)||(32800319-32800381)
[»] chr1 (2 HSPs)
chr1 (217-278)||(9535257-9535318)
chr1 (216-278)||(1550157-1550219)
[»] chr8 (2 HSPs)
chr8 (216-278)||(44731842-44731904)
chr8 (216-278)||(44734153-44734215)
[»] chr4 (1 HSPs)
chr4 (216-278)||(22804610-22804672)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 14662137 - 14662296
Alignment:
Q  17 tgaatcaacatgctacggattcaaaaccaacgaagacaatgagttctagacattctagcaggtttggcaacattatcgaagataaatatgtgtctgannn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       
T  14662137 tgaatcaacatgctacggattcaaaaccaacgaagacaatgagttctagacattctagcaggtttggcaacattatcgaagataaatatctgtctga--- 14662233  T
Q  117 nnnnnnnnnnnntcaggttgaggtcacttctggtgtttgctccttggatgctgttggagattgata 182  Q
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14662234 ---agagagagatcaggttgaggtcacttctggtgtttgctctttggatgctgttggagattgata 14662296  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 14645912 - 14646008
Alignment:
Q  17 tgaatcaacatgctacggattcaaaaccaacgaagacaatgagttctagacattctagcaggtttggcaacattatcgaagataaatatgtgtctga 113  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  14645912 tgaatcaacatcctacggattcaaaaccaatgaagacaatgagttctaaacattctagcaggtttgacaacatgatcgaagataaacatgtgtctga 14646008  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 14662328 - 14662421
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | |||||||||||||||||||||||||    
T  14662328 taattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgcttatttagtaagt---aaaacagtccctaggtaatgatgtctattgt 14662421  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 14646408 - 14646446
Alignment:
Q  129 tcaggttgaggtcacttctggtgtttgctccttggatgc 167  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14646408 tcaggttgaggtcacttctggtgtttgctccttggatgc 14646446  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 45338572 - 45338634
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||    
T  45338572 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagt 45338634  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 45336260 - 45336322
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||    
T  45336260 taattaatgtgttgcttgtgtaagtttaagtgtcatatttagattgttgcttatttggtaagt 45336322  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 48027438 - 48027345
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgt 312  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | |||||||||||||||||||||||||    
T  48027438 taatttaagtgttgcttgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtccctaggtaatgatgtctattgt 48027345  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 48024147 - 48024085
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48024147 taattaaagtgttacttgtttatgtataagtgtcataattagattgttgcttatttagtaagt 48024085  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 48025258 - 48025196
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  48025258 taattaaagtgttgcttgtttatgtataaatgtcataattagattgttgcttatttagtaagt 48025196  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 48024698 - 48024636
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  48024698 taattaaaatgttgcatgtttatgtataagtgtcataattagattgttgcttatttagtaagt 48024636  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 28784514 - 28784576
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| |||||||||||||| || ||||||| ||| |||||| ||||||||||| ||||||    
T  28784514 taattaatgtgttgcttgtttaagtttaagtgttatagttagattgttgcttatttggtaagt 28784576  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 13108970 - 13108908
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  13108970 taattaaagtgttgcttgtttatttataagtgtcataattagattgttgcttatttagtaagt 13108908  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 13111263 - 13111201
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  13111263 taattaaagtgttgcttgtttatgtagaagtgccataattagattgttgcttatttagtaagt 13111201  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 6723461 - 6723523
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  6723461 taattaaagtgttgcttgtttaagtgtaagtgtcataattagattgttgcttatttagtaagt 6723523  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 32798007 - 32798069
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||    
T  32798007 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagt 32798069  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 32800319 - 32800381
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||    
T  32800319 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagt 32800381  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 9535257 - 9535318
Alignment:
Q  217 aattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    |||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||    
T  9535257 aattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagt 9535318  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 1550157 - 1550219
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||    
T  1550157 taattaatgtgttgcttgtataagtttaagtgtcatagttagattgttgcttatttggtaagt 1550219  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 44731842 - 44731904
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||    
T  44731842 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagt 44731904  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 44734153 - 44734215
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| |||||||||||||| || ||||||||||| |||| | ||||||||||| ||||||    
T  44734153 taattaatgtgttgcttgtttaagtttaagtgtcatagttaggttgttgcttatttggtaagt 44734215  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 22804610 - 22804672
Alignment:
Q  216 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 278  Q
    ||||||| | |||||||||||| || |||||| ||||||||||| | ||||||||| ||||||    
T  22804610 taattaatgcgttgcttgtttaagtttaagtgccataattagattgctgcttatttggtaagt 22804672  T

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