View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15722_high_3 (Length: 307)

Name: NF15722_high_3
Description: NF15722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15722_high_3
NF15722_high_3
[»] chr2 (5 HSPs)
chr2 (1-295)||(14662137-14662420)
chr2 (199-295)||(14645912-14646008)
chr2 (145-183)||(14646408-14646446)
chr2 (34-96)||(45338572-45338634)
chr2 (34-96)||(45336260-45336322)
[»] chr3 (5 HSPs)
chr3 (1-96)||(48027346-48027438)
chr3 (34-96)||(48024085-48024147)
chr3 (34-96)||(48025196-48025258)
chr3 (34-96)||(48024636-48024698)
chr3 (34-96)||(28784514-28784576)
[»] chr7 (2 HSPs)
chr7 (34-96)||(13108908-13108970)
chr7 (34-96)||(13111201-13111263)
[»] chr6 (1 HSPs)
chr6 (34-96)||(6723461-6723523)
[»] chr5 (2 HSPs)
chr5 (34-96)||(32798007-32798069)
chr5 (34-96)||(32800319-32800381)
[»] chr1 (2 HSPs)
chr1 (34-95)||(9535257-9535318)
chr1 (34-96)||(1550157-1550219)
[»] chr8 (2 HSPs)
chr8 (34-96)||(44731842-44731904)
chr8 (34-96)||(44734153-44734215)
[»] chr4 (1 HSPs)
chr4 (34-96)||(22804610-22804672)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 14662420 - 14662137
Alignment:
Q  1 caatagacatcattacctagggaccgnnnnnnnacttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaattagaa- 99  Q
    |||||||||||||||||||||||| |       |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |     
T  14662420 caatagacatcattacctagggactgtttt---acttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgac 14662324  T
Q  100 --aaaacataagtagaaaccaaaacagaaaaatatcaatctccaacagcatccaaggagcaaacaccagaagtgacctcaacctgannnnnnnnnnnnnn 197  Q
      |||||||||||||     |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||                  
T  14662323 agaaaacataagtag-----aaaacaaaaaaatatcaatctccaacagcatccaaagagcaaacaccagaagtgacctcaacctga------tctctctc 14662235  T
Q  198 ntcagacacatatttatcttcgataatgttgccaaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattca 295  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662234 ttcagacagatatttatcttcgataatgttgccaaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattca 14662137  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 14646008 - 14645912
Alignment:
Q  199 tcagacacatatttatcttcgataatgttgccaaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattca 295  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  14646008 tcagacacatgtttatcttcgatcatgttgtcaaacctgctagaatgtttagaactcattgtcttcattggttttgaatccgtaggatgttgattca 14645912  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 14646446 - 14646408
Alignment:
Q  145 gcatccaaggagcaaacaccagaagtgacctcaacctga 183  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14646446 gcatccaaggagcaaacaccagaagtgacctcaacctga 14646408  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 45338634 - 45338572
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||    
T  45338634 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta 45338572  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 45336322 - 45336260
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| |||||| ||||||||||| || || ||||||||||| |||||||    
T  45336322 acttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaatta 45336260  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 48027346 - 48027438
Alignment:
Q  1 caatagacatcattacctagggaccgnnnnnnnacttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||||||||||||||||||||| |       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  48027346 caatagacatcattacctagggactgtttt---acttactaaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaatta 48027438  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 48024085 - 48024147
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  48024085 acttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaatta 48024147  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 48025196 - 48025258
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  48025196 acttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaatta 48025258  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 48024636 - 48024698
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  48024636 acttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaatta 48024698  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 28784576 - 28784514
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| |||||| ||| ||||||| || |||||||||||||| |||||||    
T  28784576 acttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaatta 28784514  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 13108908 - 13108970
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  13108908 acttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaatta 13108970  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 13111201 - 13111263
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  13111201 acttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaatta 13111263  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 6723523 - 6723461
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  6723523 acttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaatta 6723461  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 32798069 - 32798007
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  32798069 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta 32798007  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 32800381 - 32800319
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  32800381 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta 32800319  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 9535318 - 9535257
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatt 95  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||| ||||||    
T  9535318 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatt 9535257  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 1550219 - 1550157
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| |||||| ||||||||||| || || ||||||||||| |||||||    
T  1550219 acttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaatta 1550157  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 44731904 - 44731842
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||    
T  44731904 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta 44731842  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 44734215 - 44734153
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||||| | |||| ||||||||||| || |||||||||||||| |||||||    
T  44734215 acttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaatta 44734153  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 22804672 - 22804610
Alignment:
Q  34 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 96  Q
    |||||| ||||||||| | ||||||||||| |||||| || |||||||||||| | |||||||    
T  22804672 acttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaatta 22804610  T

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