View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15722_low_1 (Length: 678)
Name: NF15722_low_1
Description: NF15722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15722_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 23031052 - 23030565
Alignment:
| Q |
18 |
atgagaggttatgtggaagggtaggaaaataatttgtggctatgtagacaaggattgatgctatggtaaggtcaacaatgacataggaaaatgatctaat |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031052 |
atgagaggttatgtggaagggtaggaaagtaatttgtggctatataggcaaggattgatgctatggtaaggtcaacaatgacataggaaaatgatctaat |
23030953 |
T |
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| Q |
118 |
caatgaacggttaaaacaatgtggtggaattgctttcttgacttcaccaagagtgaatggtggttttgtagttggaaccctcttcaaatgttcatcattc |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030952 |
caatgaacggtgaaaacaatgtggtggaattgctttcttgacttcaccaagagtgaatggtggttttgtagttggaaccctcttcaaatgttcatcattc |
23030853 |
T |
|
| Q |
218 |
tctattttcctttgtgatggaggattagaggctctaccacctgctcccatttgcacacaacctataaacnnnnnnncacaatcaccataattattacgta |
317 |
Q |
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| T |
23030852 |
tctattttcctttgtgatggaggattagaggctctaccacctgctcccatttgcacacaacctataaagaaaaaaacacaatcacaataattattacgta |
23030753 |
T |
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| Q |
318 |
tcactttatatgtagtgcaaattttgttgcaattttcatcatataatcacaacatttttagattaaaagccaagtgtatcacatatatttcgctttcctt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
23030752 |
tcactttatatgtagtgcaaattttgttgcaattttcatcatataatcacaacatttttagattaaaagccaagtttatcacatatatt--------gtt |
23030661 |
T |
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| Q |
418 |
ataaatcgtgtgaaatgcaaaatggttgaaattggcaaaacattttttgcgtgtaaaattgaagtatgtcattgtt--agcatttacacatcaaaa |
511 |
Q |
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| T |
23030660 |
ataaatcgtgtgaaatgcaaaatggttgaaattggcaaaacattttttgcgtgtaaaattgaagtatgtcattgttagagcatttacacatcaaaa |
23030565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 507 - 661
Target Start/End: Complemental strand, 23030526 - 23030372
Alignment:
| Q |
507 |
caaaatttcattgataacgtgtggtgactttggcttcaacgtttatggtttatagatgaaacaacgtaaacaatctaactaacatatgcaaaataattaa |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030526 |
caaaatttcattgataacgtgtggtgactttggcttcaacgtttatggtttatagatgaaacaacgtaaacaatctaactaacatatgcaaaataattaa |
23030427 |
T |
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| Q |
607 |
gtagcttgcgcaatacaaactaaacaactaagtaataagtaaactaggtacaagt |
661 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23030426 |
gtagcttgtgcaataaaaactaaacaactaagtaataagtaaactaggtacaagt |
23030372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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