View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15722_low_2 (Length: 470)
Name: NF15722_low_2
Description: NF15722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15722_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 37077819 - 37078255
Alignment:
| Q |
18 |
cattcaccatgtgatctctatatcattcatttcaaaattgaatcttatttattatcattaggagaaaattactctcaattttggaagtagcaacttagac |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37077819 |
cattcaacatgtgatctctatatcattcatttcaaaattgaatcttatttattatcattaggagaaaattactctcaattttggaagtagcaacttagac |
37077918 |
T |
|
| Q |
118 |
atgtaattatgggtgcgtgcattttgaatcccaataaaccagttttaaccacacgatgaaattaccacgtttattttaaccgtggattgagttagtgaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37077919 |
atgtaattatgggtgcgtgcattttgaatcccaataaaccagttttaaccacacgatgaaattaccacgtttattttaaccgtggattgagttagtgaca |
37078018 |
T |
|
| Q |
218 |
aaacagacgcaaatggttacacnnnnnnnnnnnnnnnnccctccatcttttattcagtctctctcctctaatgcaaatggttacatacttatattcttgt |
317 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37078019 |
aaacagacgcaaatggttacacttttttttccttttttccctccatcttttattcagtctctctcctctaatgcaaatggttacatacttatattcttgt |
37078118 |
T |
|
| Q |
318 |
gaattcgataactaacgacgttgacgaattttcctttacgttctccgcttacaaaaatggtaataaagatgattttctctttctgtatttcatttttatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37078119 |
gaattcgataactaacgacgttgacgaattttcctttacgttctccgcttacaaaaatggtaataaagatgattttctctttctgtatttcatttttatg |
37078218 |
T |
|
| Q |
418 |
ctttctctttgtttaacccttactttaatgtataatc |
454 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37078219 |
ctttctctttgtttaacccttactttaatgtataatc |
37078255 |
T |
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