View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15723_high_1_N (Length: 359)

Name: NF15723_high_1_N
Description: NF15723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15723_high_1_N
NF15723_high_1_N
[»] chr3 (10 HSPs)
chr3 (15-359)||(46404517-46404861)
chr3 (63-338)||(5004687-5004970)
chr3 (62-339)||(16975252-16975515)
chr3 (58-166)||(16475273-16475381)
chr3 (62-232)||(11967971-11968130)
chr3 (63-150)||(9104174-9104261)
chr3 (74-167)||(17542813-17542904)
chr3 (62-139)||(7337257-7337334)
chr3 (178-230)||(8730913-8730966)
chr3 (178-230)||(9082800-9082853)
[»] chr7 (12 HSPs)
chr7 (64-359)||(15873891-15874186)
chr7 (72-339)||(21491459-21491739)
chr7 (61-263)||(22077631-22077831)
chr7 (62-224)||(18367412-18367577)
chr7 (52-271)||(48576321-48576538)
chr7 (63-199)||(9993291-9993427)
chr7 (53-204)||(48654339-48654488)
chr7 (63-150)||(12196729-12196816)
chr7 (62-105)||(10289388-10289431)
chr7 (272-339)||(18367293-18367363)
chr7 (66-104)||(11036685-11036723)
chr7 (63-100)||(7503909-7503946)
[»] chr6 (10 HSPs)
chr6 (64-359)||(34636188-34636477)
chr6 (58-339)||(25005139-25005429)
chr6 (62-339)||(23260544-23260829)
chr6 (63-339)||(32450228-32450512)
chr6 (237-338)||(10751527-10751636)
chr6 (64-163)||(26182602-26182700)
chr6 (63-138)||(11166587-11166662)
chr6 (62-115)||(10751623-10751676)
chr6 (64-228)||(24992418-24992578)
chr6 (62-167)||(13777247-13777350)
[»] scaffold0413 (1 HSPs)
scaffold0413 (62-359)||(8839-9145)
[»] chr5 (4 HSPs)
chr5 (144-359)||(536895-537110)
chr5 (64-224)||(536731-536891)
chr5 (44-339)||(4557935-4558241)
chr5 (63-150)||(27026621-27026708)
[»] chr1 (10 HSPs)
chr1 (62-339)||(35762015-35762303)
chr1 (52-263)||(9537406-9537615)
chr1 (61-198)||(37667265-37667401)
chr1 (63-230)||(16074710-16074879)
chr1 (220-339)||(37667144-37667271)
chr1 (62-185)||(21264718-21264841)
chr1 (64-167)||(6835953-6836056)
chr1 (62-139)||(338059-338135)
chr1 (62-139)||(43407930-43408007)
chr1 (63-104)||(8421574-8421615)
[»] chr2 (7 HSPs)
chr2 (62-214)||(32735391-32735543)
chr2 (54-230)||(1193590-1193765)
chr2 (63-167)||(12774954-12775056)
chr2 (52-167)||(28267692-28267804)
chr2 (130-222)||(29270702-29270792)
chr2 (44-138)||(23828298-23828392)
chr2 (62-139)||(40447432-40447508)
[»] chr4 (3 HSPs)
chr4 (63-263)||(28969233-28969431)
chr4 (96-339)||(49499045-49499297)
chr4 (62-150)||(40458905-40458992)
[»] scaffold1838 (1 HSPs)
scaffold1838 (108-263)||(221-374)
[»] scaffold0120 (1 HSPs)
scaffold0120 (63-138)||(2645-2720)
[»] chr8 (5 HSPs)
chr8 (62-167)||(22816487-22816590)
chr8 (130-230)||(35839168-35839268)
chr8 (61-138)||(20264999-20265076)
chr8 (61-138)||(21051628-21051705)
chr8 (65-150)||(40841568-40841652)
[»] scaffold0002 (1 HSPs)
scaffold0002 (51-138)||(356884-356971)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 46404861 - 46404517
Alignment:
Q  15 agaccgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttt-ccccatacgttcttactaagtactaggattatgtta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46404861 agactgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttttccccatacgttcttactaagtactaggattatgtta 46404762  T
Q  114 tgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagttta 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404761 tgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagttta 46404662  T
Q  214 attatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttg 313  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404661 attatattttatatgatatctgtatgataatgttttgtggaatggca-tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttg 46404563  T
Q  314 ctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46404562 ctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 46404517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 63 - 338
Target Start/End: Complemental strand, 5004970 - 5004687
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  163 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat- 261  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  5004870 aatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacatt 5004771  T
Q  262 -------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 338  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004770 tattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 5004687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 62 - 339
Target Start/End: Original strand, 16975252 - 16975515
Alignment:
Q  62 gaggtaagggctttttcccc-atacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 160  Q
    ||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  16975252 gaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaact 16975351  T
Q  161 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||     
T  16975352 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatgacg 16975451  T
Q  261 ttttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
    |                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16975452 t----------------tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 16975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 16475273 - 16475381
Alignment:
Q  58 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 157  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16475273 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 16475372  T
Q  158 actaaaata 166  Q
    |||||||||    
T  16475373 actaaaata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 11968130 - 11967971
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaac 159  Q
    |||||||||| |||||||| |||||| | |||||||||||||||| |||||||||      |||||||||||||      |||||||||  ||||| | |    
T  11968130 gaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttatga------ggtagagattctt------tgaaaagaagacaaaaaatc 11968044  T
Q  160 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 232  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11968043 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgt 11967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 9104174 - 9104261
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 150  Q
    ||||||||| |||||||||||||||| |||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  74 ttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 167  Q
    |||||||||||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 7337334 - 7337257
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 139  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  7337334 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 7337257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  178 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 230  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  178 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 230  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 64 - 359
Target Start/End: Complemental strand, 15874186 - 15873891
Alignment:
Q  64 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  164 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggcattt 15873987  T
Q  264 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873986 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 15873891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 72 - 339
Target Start/End: Complemental strand, 21491739 - 21491459
Alignment:
Q  72 ctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatga 169  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatga 21491640  T
Q  170 attcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttcta 269  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||| || ||    
T  21491639 atttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatgacatttatttta 21491541  T
Q  270 tt--------catatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
    ||        ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  21491540 ttttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 21491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 61 - 263
Target Start/End: Original strand, 22077631 - 22077831
Alignment:
Q  61 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 160  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||  ||||||||    
T  22077631 tgaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaagaa--aaacaact 22077728  T
Q  161 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 260  Q
    ||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  22077729 aaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgaca 22077828  T
Q  261 ttt 263  Q
    |||    
T  22077829 ttt 22077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 18367577 - 18367412
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac-aaaac--aa 158  Q
    ||||||||||||||||||| |||||| | || |||| |||||||  |||||||||||||||||||||||||||||| ||||||||||||  |||||  ||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaa 18367478  T
Q  159 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 224  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367477 ttaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 52 - 271
Target Start/End: Original strand, 48576321 - 48576538
Alignment:
Q  52 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 151  Q
    |||||||| | ||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||||| || ||| |||||       
T  48576321 taaagcgtataaggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag--- 48576417  T
Q  152 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgtctgcatgataatgttatg 250  Q
    |||| || ||||||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| ||||||||||| || |||||||||| |||    
T  48576418 aaaataattaaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatg 48576517  T
Q  251 tggaatgacattttttctatt 271  Q
      ||||||||||| |||||||    
T  48576518 cagaatgacatttattctatt 48576538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 9993291 - 9993427
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 162  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | |||||| || ||  ||||   |||||||||| |||||||||| ||||||| |||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaattaa 9993390  T
Q  163 aatatgaattcatatggtaaaatttaaccttttataa 199  Q
    |||||  ||| |||||||||||| |||  ||||||||    
T  9993391 aatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 48654488 - 48654339
Alignment:
Q  53 aaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaaca 152  Q
    ||||| || |||||||||| ||||||||||||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||||||| ||| |||||  |    
T  48654488 aaagctttcgaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--a 48654391  T
Q  153 aaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagtt 204  Q
    |||||||||||||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654390 aaacaactaaaatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 12196816 - 12196729
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 150  Q
    ||||||||||||||||||||||| |||||||||||| | |||| |||||||| || ||  |||||  |||||||||| || |||||||    
T  12196816 aggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 10289431 - 10289388
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactagga 105  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  10289431 gaggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 18367363 - 18367293
Alignment:
Q  272 catatatgttttt--gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
    |||||||||||||  |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  18367363 catatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 18367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 11036723 - 11036685
Alignment:
Q  66 taagggctttttccccatacgttcttactaagtactagg 104  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  11036723 taagggctttttccccacacgttcttactaagtgctagg 11036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 7503909 - 7503946
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtac 100  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  7503909 aggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 64 - 359
Target Start/End: Original strand, 34636188 - 34636477
Alignment:
Q  64 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  164 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatgacattt 34636387  T
Q  264 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 359  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636388 tttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 34636477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 58 - 339
Target Start/End: Original strand, 25005139 - 25005429
Alignment:
Q  58 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 157  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25005139 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 25005238  T
Q  158 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatg 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  25005239 actaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatg 25005338  T
Q  258 acat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
    ||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25005339 acatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 62 - 339
Target Start/End: Complemental strand, 23260829 - 23260544
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  162 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  23260729 aaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatgacat 23260630  T
Q  262 --------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
            |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260629 ttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatat 23260544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 63 - 339
Target Start/End: Complemental strand, 32450512 - 32450228
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 162  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32450512 aggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 32450414  T
Q  163 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat- 261  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||     
T  32450413 aatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatgacatt 32450314  T
Q  262 -------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  32450313 tattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatat 32450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 10751636 - 10751527
Alignment:
Q  237 atgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 328  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751636 atgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 10751537  T
Q  329 aatgaaaata 338  Q
    ||||||||||    
T  10751536 aatgaaaata 10751527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  64 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 163  Q
    ||||||||||||||||||||| || | ||||||||| |||||| ||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 138  Q
    ||||||||||||||||||||||||||||||||||||  ||||||  | ||||||| ||  |||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 10751676 - 10751623
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatg 115  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751676 gaggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 24992418 - 24992578
Alignment:
Q  64 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 163  Q
    ||||||||||||||||| ||| ||   || |||||||||||  |||||||||||||| | ||||| |||||||| | |||||||||  ||||||| ||||    
T  24992418 ggtaagggctttttccc-atatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaaga--aaaacaattaaa 24992513  T
Q  164 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 228  Q
    ||||   || |  ||||||||||||  ||||||||||| | |||| ||||||||  |||||||||    
T  24992514 atatttctttacgtggtaaaatttattcttttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 13777350 - 13777247
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 161  Q
    ||||||||| |||||||||| ||||| | || ||| ||||||||| ||||| ||||||| | ||| | |||||| ||| ||| ||||||  |||||||||    
T  13777350 gaggtaaggactttttccccgtacgtccataataaatactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaagaa--aaacaacta 13777253  T
Q  162 aaatat 167  Q
    ||||||    
T  13777252 aaatat 13777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 62 - 359
Target Start/End: Original strand, 8839 - 9145
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  8839 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaacta 8938  T
Q  162 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac-- 259  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      
T  8939 aaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacat 9038  T
Q  260 -------attttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtcc 352  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9039 ttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagattggtcc 9138  T
Q  353 atgtgga 359  Q
    |||||||    
T  9139 atgtgga 9145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 144 - 359
Target Start/End: Original strand, 536895 - 537110
Alignment:
Q  144 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataa 536994  T
Q  244 tgttatgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 343  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536995 tgttatgtggaatggcattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 537094  T
Q  344 gtttggtccatgtgga 359  Q
    ||||||||||||||||    
T  537095 gtttggtccatgtgga 537110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  64 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  164 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 44 - 339
Target Start/End: Complemental strand, 4558241 - 4557935
Alignment:
Q  44 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttg 143  Q
    |||||||||||| |||  ||||||||||||||||||| ||||||   ||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||    
T  4558241 ctaggaggtaaaacgtacgaggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgttg 4558143  T
Q  144 aaaaga-acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgata 242  Q
    | |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || || |||    
T  4558142 agaagagagaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataata 4558043  T
Q  243 atgttatgtggaatgacattttttctatt--------catatatg--tttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaat 331  Q
    |||||| || ||||||| ||| || ||||        ||||||||  ||||||||||||||  ||||||||||| || |||| |||||||||||| ||||    
T  4558042 atgttacgtagaatgacttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaat 4557943  T
Q  332 gaaaatat 339  Q
    ||||||||    
T  4557942 gaaaatat 4557935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 27026621 - 27026708
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 150  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||| || ||  ||||   |||||||||| ||||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 62 - 339
Target Start/End: Complemental strand, 35762303 - 35762015
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 161  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  162 aaatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac 259  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  35762203 aaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaatgac 35762104  T
Q  260 at--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
    ||        ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  35762103 atttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatat 35762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 52 - 263
Target Start/End: Complemental strand, 9537615 - 9537406
Alignment:
Q  52 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 151  Q
    |||||||| | | |||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||     
T  9537615 taaagcgtatcaagtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa- 9537517  T
Q  152 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgt 251  Q
     |||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  9537516 -aaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgt 9537418  T
Q  252 ggaatgacattt 263  Q
     |||||||||||    
T  9537417 agaatgacattt 9537406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 37667401 - 37667265
Alignment:
Q  61 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 160  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37667401 tgaggtaagg-ctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 37667303  T
Q  161 aaaatatgaattcatatggtaaaatttaaccttttata 198  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37667302 aaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 63 - 230
Target Start/End: Original strand, 16074710 - 16074879
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatg---ttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaac 159  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||| |||   |||||||||| || |||||||| ||||| ||| |||||||  ||||||     
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaacaat 16074807  T
Q  160 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 230  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 37667271 - 37667144
Alignment:
Q  220 ttttatatgatgtctgcatgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 311  Q
    |||||||||||||||| ||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  312 tgctgataaactaaataaatgaaaatat 339  Q
    ||||||||||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatat 37667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 21264841 - 21264718
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||  | ||| || ||  |  |||||  |||||||||| |||||||||| ||||||| ||    
T  21264841 gaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatta 21264742  T
Q  162 aaatatgaattcatatggtaaaat 185  Q
    ||||||  ||| | ||||||||||    
T  21264741 aaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 6835953 - 6836056
Alignment:
Q  64 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 163  Q
    ||||||||||||||||||||||||||||||||||| |||||  | | | || || ||  |||||  |||||||||| |||||||||| ||||||| ||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtcttttgaaaagaagaaaacaattaaa 6836052  T
Q  164 atat 167  Q
    ||||    
T  6836053 atat 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 338059 - 338135
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 139  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  338059 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 43408007 - 43407930
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 139  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  43408007 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 43407930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 8421574 - 8421615
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactagg 104  Q
    ||||||||||||||||||||||||| | |||||||| |||||    
T  8421574 aggtaagggctttttccccatacgtacatactaagtgctagg 8421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 32735543 - 32735391
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 161  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32735543 gaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 32735444  T
Q  162 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 214  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735443 aaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 1193590 - 1193765
Alignment:
Q  54 aagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaa 153  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||| |||| | | |||||| ||  |  |||||  |||||||||| |||||||||| ||    
T  1193590 aagcgttcgaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaa 1193688  T
Q  154 aacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 230  Q
    ||||| ||||||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193689 aacaattaaaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 12775056 - 12774954
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 162  Q
    ||||||||||||||||||||||||| | ||| |||||||||||| ||||| ||||||| | ||| | |||||| ||| ||| |||||  |||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaactaa 12774959  T
Q  163 aatat 167  Q
    |||||    
T  12774958 aatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 28267804 - 28267692
Alignment:
Q  52 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 151  Q
    |||||||| | ||||||||| |||||||| |||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||| ||| |||||||||      
T  28267804 taaagcgtataaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaaga-- 28267708  T
Q  152 aaaacaactaaaatat 167  Q
    ||||||||||||||||    
T  28267707 aaaacaactaaaatat 28267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 29270702 - 29270792
Alignment:
Q  130 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 222  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 23828392 - 23828298
Alignment:
Q  44 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 138  Q
    |||||| ||||||||| | ||||||||  ||||| |||| |||||||||||||||  ||||| | ||||||||| ||  |||||| |||||||||    
T  23828392 ctaggaagtaaagcgtctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaattcttgtc 23828298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 40447432 - 40447508
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 139  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  40447432 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 40447508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 28969431 - 28969233
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 162  Q
    ||||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaactaa 28969334  T
Q  163 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 262  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| ||||||||||    
T  28969333 aatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatgacatt 28969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 96 - 339
Target Start/End: Original strand, 49499045 - 49499297
Alignment:
Q  96 agtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 195  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  196 ataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctatt--------catatatg-tttttgt 286  Q
    |||||| ||||||||||||||||||||||||| |||| || || |  |||||| || ||||||||||| || ||||        |||||||| |||||||    
T  49499145 ataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatgacatttattttattttgatatgcatatatgttttttgt 49499243  T
Q  287 ggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 339  Q
    |||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  49499244 ggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 49499297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 40458905 - 40458992
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 150  Q
    |||||||||||||||||||||||||| | |||||||| ||| || | |||||| || || ||||||  |||||||||| || |||||||    
T  40458905 gaggtaagggctttttccccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 40458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 108 - 263
Target Start/End: Original strand, 221 - 374
Alignment:
Q  108 atgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 207  Q
    ||||||||||||| || ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  208 agtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 263  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||    
T  319 agtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgccattt 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 2720 - 2645
Alignment:
Q  63 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 138  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||  |||||| |||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 22816590 - 22816487
Alignment:
Q  62 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 161  Q
    |||||||||||||||||||||||||||||| ||||||  ||||| | |||||| || ||  ||| |  |||||||||| |||||||||  ||||||| ||    
T  22816590 gaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaaga--aaaacaatta 22816493  T
Q  162 aaatat 167  Q
    ||||||    
T  22816492 aaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  130 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 229  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  230 t 230  Q
    |    
T  35839268 t 35839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 20265076 - 20264999
Alignment:
Q  61 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 138  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  20265076 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 21051705 - 21051628
Alignment:
Q  61 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 138  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  21051705 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 40841652 - 40841568
Alignment:
Q  65 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 150  Q
    |||||||||||||||| |||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 40841568  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 356971 - 356884
Alignment:
Q  51 gtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 138  Q
    ||||||||| | ||||||||  |||||||||||||||||||||||||| ||||||   |||| |||| ||  |||||| |||||||||    
T  356971 gtaaagcgtctaaggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattcttgtc 356884  T

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