View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15724_high_1 (Length: 290)

Name: NF15724_high_1
Description: NF15724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15724_high_1
NF15724_high_1
[»] chr3 (15 HSPs)
chr3 (115-280)||(29542335-29542500)
chr3 (123-269)||(41878686-41878834)
chr3 (116-269)||(22533989-22534145)
chr3 (128-280)||(19979226-19979378)
chr3 (116-256)||(42806261-42806401)
chr3 (123-243)||(53876866-53876986)
chr3 (123-237)||(6925945-6926059)
chr3 (128-218)||(37537238-37537328)
chr3 (126-247)||(6894190-6894311)
chr3 (131-219)||(47160990-47161078)
chr3 (192-228)||(25408827-25408863)
chr3 (134-222)||(36803163-36803251)
chr3 (163-219)||(33692909-33692965)
chr3 (50-82)||(43149226-43149258)
chr3 (128-216)||(45966984-45967072)
[»] chr6 (14 HSPs)
chr6 (115-280)||(11298540-11298705)
chr6 (123-280)||(29321272-29321429)
chr6 (114-232)||(32533060-32533178)
chr6 (128-237)||(15117242-15117351)
chr6 (114-243)||(18672020-18672148)
chr6 (123-235)||(18015738-18015850)
chr6 (132-222)||(11324470-11324560)
chr6 (128-229)||(18673363-18673464)
chr6 (126-229)||(5667364-5667467)
chr6 (125-222)||(2682758-2682855)
chr6 (186-225)||(22469479-22469518)
chr6 (186-227)||(17292767-17292808)
chr6 (186-222)||(10944170-10944206)
chr6 (194-222)||(31454046-31454074)
[»] chr1 (17 HSPs)
chr1 (115-269)||(28442103-28442258)
chr1 (116-256)||(28400482-28400622)
chr1 (118-243)||(5411728-5411853)
chr1 (123-237)||(12688172-12688286)
chr1 (114-242)||(45718318-45718445)
chr1 (123-235)||(48973645-48973757)
chr1 (163-228)||(26260785-26260850)
chr1 (126-228)||(23997109-23997211)
chr1 (186-228)||(52626563-52626605)
chr1 (157-228)||(5958326-5958397)
chr1 (128-222)||(6723717-6723811)
chr1 (182-228)||(8527072-8527118)
chr1 (163-221)||(9484879-9484937)
chr1 (128-228)||(16909036-16909136)
chr1 (163-227)||(44675129-44675193)
chr1 (132-228)||(17128488-17128584)
chr1 (128-216)||(34703494-34703582)
[»] chr4 (19 HSPs)
chr4 (126-275)||(11131140-11131289)
chr4 (123-243)||(54870803-54870923)
chr4 (114-243)||(10552623-10552752)
chr4 (128-247)||(18921911-18922030)
chr4 (128-247)||(30739500-30739619)
chr4 (114-222)||(37207401-37207509)
chr4 (133-243)||(13137084-13137194)
chr4 (163-220)||(52578018-52578075)
chr4 (132-218)||(40153935-40154021)
chr4 (117-222)||(9831372-9831477)
chr4 (129-228)||(12114995-12115094)
chr4 (163-222)||(20510427-20510486)
chr4 (188-225)||(27270009-27270046)
chr4 (142-225)||(53650436-53650519)
chr4 (182-228)||(13608948-13608994)
chr4 (129-235)||(42527335-42527441)
chr4 (188-225)||(21204901-21204938)
chr4 (163-227)||(25130442-25130506)
chr4 (186-222)||(37772969-37773005)
[»] chr8 (12 HSPs)
chr8 (131-280)||(7178978-7179127)
chr8 (128-256)||(16489432-16489560)
chr8 (129-247)||(38233202-38233320)
chr8 (128-237)||(38685759-38685868)
chr8 (117-236)||(33191195-33191313)
chr8 (128-222)||(37929106-37929200)
chr8 (123-222)||(41255043-41255142)
chr8 (163-221)||(8462520-8462578)
chr8 (163-220)||(10616938-10616995)
chr8 (195-260)||(39896243-39896308)
chr8 (49-77)||(33511756-33511784)
chr8 (181-229)||(38738477-38738525)
[»] chr7 (14 HSPs)
chr7 (117-241)||(38342952-38343076)
chr7 (121-256)||(34871558-34871693)
chr7 (114-243)||(40616719-40616848)
chr7 (114-219)||(27854867-27854972)
chr7 (123-237)||(11884360-11884467)
chr7 (128-248)||(8566752-8566872)
chr7 (212-275)||(3535817-3535880)
chr7 (49-101)||(41877983-41878039)
chr7 (128-221)||(38153904-38153997)
chr7 (123-228)||(47543420-47543525)
chr7 (182-228)||(9628252-9628298)
chr7 (163-229)||(12092710-12092776)
chr7 (187-229)||(35516750-35516792)
chr7 (189-222)||(34237214-34237247)
[»] chr2 (11 HSPs)
chr2 (114-237)||(40426917-40427040)
chr2 (114-243)||(841533-841662)
chr2 (128-247)||(1997678-1997797)
chr2 (115-243)||(24739803-24739931)
chr2 (128-221)||(44735982-44736075)
chr2 (186-228)||(45131126-45131168)
chr2 (186-228)||(8090525-8090567)
chr2 (186-228)||(27009255-27009297)
chr2 (131-228)||(38408989-38409086)
chr2 (51-84)||(43621993-43622026)
chr2 (128-228)||(40638803-40638903)
[»] chr5 (19 HSPs)
chr5 (123-237)||(21041943-21042057)
chr5 (129-247)||(7465223-7465341)
chr5 (123-243)||(7961129-7961249)
chr5 (114-254)||(32017958-32018098)
chr5 (161-228)||(16610600-16610667)
chr5 (126-222)||(12831519-12831615)
chr5 (153-229)||(29994642-29994718)
chr5 (182-229)||(8006827-8006874)
chr5 (163-222)||(12863494-12863553)
chr5 (163-228)||(26778719-26778784)
chr5 (162-222)||(27482677-27482737)
chr5 (186-222)||(39839961-39839997)
chr5 (128-179)||(12564942-12564993)
chr5 (153-228)||(27843491-27843566)
chr5 (185-228)||(32252175-32252218)
chr5 (162-220)||(25326156-25326214)
chr5 (123-228)||(31706425-31706530)
chr5 (50-78)||(14716112-14716140)
chr5 (163-227)||(18967887-18967951)
[»] scaffold0225 (1 HSPs)
scaffold0225 (114-243)||(6490-6619)
[»] scaffold0795 (1 HSPs)
scaffold0795 (129-228)||(2158-2257)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 29542500 - 29542335
Alignment:
Q  115 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 214  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29542500 tagctctattatacaggtggtggacatgattaacttgctaactttccagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtgg 29542401  T
Q  215 cttagtccatttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtgatgct 280  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  29542400 cttagtccatttactttactaggaattggttaacgggtgtttggtgttaagctgttttgtggtgct 29542335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 123 - 269
Target Start/End: Original strand, 41878686 - 41878834
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41878686 ttatacaagtggtggacaggattaagttgctaactttccagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 41878785  T
Q  223 atttactttactaggaataggttaacgggtg--tttggtggtaagctgt 269  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  41878786 atttactttactaggaataggttaacgggtgtttttggtggtaagctgt 41878834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 22533989 - 22534145
Alignment:
Q  116 agctcttttatacaggtggtggacaggattaag-ttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 214  Q
    |||||| |||||||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  22533989 agctctattatacaggtggtggataggattaaggttgttaactttccagtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtgg 22534088  T
Q  215 cttagtccatttactttactaggaataggttaacgggtgt--ttggtggtaagctgt 269  Q
    |||||||||||||||||||| |||||||||||| || |||  |||||||||||||||    
T  22534089 cttagtccatttactttacttggaataggttaatggttgttcttggtggtaagctgt 22534145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 19979378 - 19979226
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||||| ||||||| || |||||||   ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  19979378 caggtggtggacatgattaagctgttaactttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttggtggcttagcccattta 19979279  T
Q  228 ctttactaggaataggttaacgggtgtttggtggtaagctgttctgtgatgct 280  Q
    ||||||||| |||||| ||| || |||| |||| | ||||||| |||| ||||    
T  19979278 ctttactagaaataggctaatggttgttcggtgctgagctgttttgtggtgct 19979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 116 - 256
Target Start/End: Complemental strand, 42806401 - 42806261
Alignment:
Q  116 agctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggc 215  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  42806401 agctctattaaacaggtggtggataggattaagttgttaactttcctgtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggc 42806302  T
Q  216 ttagtccatttactttactaggaataggttaacgggtgttt 256  Q
    |||||||||| |||||||| || ||||| ||| || |||||    
T  42806301 ttagtccattcactttacttggcataggataatggttgttt 42806261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 53876986 - 53876866
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||||||||  ||||||||| | |||||   |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  53876986 ttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttggtcc 53876887  T
Q  223 atttactttactaggaatagg 243  Q
     |||||||||||||| |||||    
T  53876886 gtttactttactaggcatagg 53876866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 6925945 - 6926059
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||||||||  ||||||||| | ||||    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  6925945 ttatacaggtggtggacaaaattaagttgttgacttacaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 6926044  T
Q  223 atttactttactagg 237  Q
     ||||| ||||||||    
T  6926045 gtttacattactagg 6926059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 37537328 - 37537238
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctta 218  Q
    ||||||||||||| ||||||| |  |||| ||| ||||||||||||||||||| |   |||||||||||| ||||||||||||||||||||    
T  37537328 caggtggtggacaagattaaggttgtaacctttaggtggttgaaggtgaagttcgcttctcttccctttacttatcatggttggtggctta 37537238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 6894190 - 6894311
Alignment:
Q  126 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 225  Q
    |||||||||| || ||||||||||| || |||||    |||||||||| || |||| | ||||||||||| |||||||||||||||||| ||||||| ||    
T  6894190 tacaggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgtt 6894289  T
Q  226 tactttactaggaataggttaa 247  Q
    |||| |  |||| |||||||||    
T  6894290 tactattttaggcataggttaa 6894311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 47160990 - 47161078
Alignment:
Q  131 gtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttag 219  Q
    |||||||| |||||||||||| ||||||||  |||||||||||||||||||    ||||||| || ||||| |||||||||||||||||    
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttag 47161078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 25408827 - 25408863
Alignment:
Q  192 cctttaattatcatggttggtggcttagtccatttac 228  Q
    |||| ||||||||||||||||||||||||||||||||    
T  25408827 ccttcaattatcatggttggtggcttagtccatttac 25408863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 36803163 - 36803251
Alignment:
Q  134 gtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||| |||||| | ||| ||||||  ||||||||||| |||||||  |||| |||| || |||| ||||| |||||||||||||||    
T  36803163 gtggacaagattaaatcgcttacttttatgtggttgaaggcgaagtttaccactattcctttcaattttcatgcttggtggcttagtcc 36803251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 33692965 - 33692909
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttag 219  Q
    ||||||||||||||| |||  ||| |||||||| || | ||||||||||||||||||    
T  33692965 gtggttgaaggtgaaatttaacacgcttcccttcaactttcatggttggtggcttag 33692909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 43149258 - 43149226
Alignment:
Q  50 caaaatagttgtacaaatatcattactcaaaaa 82  Q
    |||||||||||| ||||||||||||||||||||    
T  43149258 caaaatagttgttcaaatatcattactcaaaaa 43149226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 45967072 - 45966984
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 216  Q
    ||||||||||||| |||||||  | |||| ||| ||||||||||||||| | | |   ||||||| || || |||||||||||||||||    
T  45967072 caggtggtggacaagattaaggcggtaacctttaggtggttgaaggtgaggatcgcttctcttcctttcaactatcatggttggtggct 45966984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 11298705 - 11298540
Alignment:
Q  115 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 214  Q
    ||||||| |||| || || ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11298705 tagctctattatgcatgtagtggacatgattaagttgttaacttttcagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtgg 11298606  T
Q  215 cttagtccatttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtgatgct 280  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||    
T  11298605 cttagtccatttactttactaggaataggctaacggttgtttggtgctaagctgttttgtggtgct 11298540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 29321429 - 29321272
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| |||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  29321429 ttatgcaggtggtggacaggattaagttgttaactttccagtggttgaaagtgaagtttgtcactcttccctttaactatgatggttggtggcttagtcc 29321330  T
Q  223 atttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtgatgct 280  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||    
T  29321329 atttactttactaggaataggctaacggttgtttggtgctaagctgttttgtggtgct 29321272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 32533178 - 32533060
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||| ||||  |||||||||| |||||||||||| |||| ||   |||||||||| |||||||||  |||||||||||||| ||||||||||||||    
T  32533178 atagctctattatgtaggtggtggataggattaagttgttaacattcaagtggttgaagatgaagtttgctactcttccctttaactatcatggttggtg 32533079  T
Q  214 gcttagtccatttacttta 232  Q
    ||||||||| || ||||||    
T  32533078 gcttagtccgttcacttta 32533060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 15117351 - 15117242
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||  ||||||||||||||||||||||||||||||  |||||| || |    
T  15117351 caggtggtggacatgattaagctgctaacttataagtggttgaaggtgaagtatgctactcttccctttaattatcatggttggtggagtagtcctttca 15117252  T
Q  228 ctttactagg 237  Q
    ||||| ||||    
T  15117251 ctttattagg 15117242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 18672020 - 18672148
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||  |||| |||| |||||||| ||||||||||||||||| |  ||||||||||||||||| | | |||||||||||||| ||||||||||||||    
T  18672020 atagctcaattattcagggggtggacaagattaagttgctaacttataagtggttgaaggtgaagtatct-actcttccctttaactatcatggttggtg 18672118  T
Q  214 gcttagtccatttactttactaggaatagg 243  Q
    ||| ||||| || || |||||||| |||||    
T  18672119 gctgagtccgttcaccttactaggcatagg 18672148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 18015850 - 18015738
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| ||||||||||| |||||||||||| |||| |||  |||||||  ||||||||||   |||||||||||||| ||||||||||||||||||| |||    
T  18015850 ttatgcaggtggtggataggattaagttgttaacgtttaagtggttgggggtgaagtttacaactcttccctttaactatcatggttggtggcttactcc 18015751  T
Q  223 atttactttacta 235  Q
     ||||||||||||    
T  18015750 gtttactttacta 18015738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 11324470 - 11324560
Alignment:
Q  132 tggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| |||| ||||||||||||  |||||  ||||||||||| ||| ||||   |||||||||| ||||||||||| ||||||||||||||    
T  11324470 tggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtcc 11324560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 18673363 - 18673464
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||| |  |||||||  || ||||||  ||||||||||| ||| | ||||| ||||||| | ||||||||||||||||||||||| || ||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  228 ct 229  Q
    ||    
T  18673463 ct 18673464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 5667467 - 5667364
Alignment:
Q  126 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 225  Q
    |||||||||| || ||||||||||| || |||||    |||||||||  || |||| | |||||| |||| |||||||||||||||||| ||||||| ||    
T  5667467 tacaggtggtcgataggattaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgtt 5667368  T
Q  226 tact 229  Q
    ||||    
T  5667367 tact 5667364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 2682758 - 2682855
Alignment:
Q  125 atacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||| || |||| ||||||||  ||  ||||| |||||||||||||||| |||   ||| ||| ||| |||| |||||||||||||||||||||    
T  2682758 atacaggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcc 2682855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 22469479 - 22469518
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtccatt 225  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  22469479 ctcttcccttcaattatcatgcttggtggcttagtccatt 22469518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 17292808 - 17292767
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtccattta 227  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  17292808 ctcttcccttcaattatcatggttgatggcttagtccgttta 17292767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 10944170 - 10944206
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  10944170 ctcttccctttaattaccatggtttgtggcttagtcc 10944206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 31454074 - 31454046
Alignment:
Q  194 tttaattatcatggttggtggcttagtcc 222  Q
    |||||||||||||||||||||||||||||    
T  31454074 tttaattatcatggttggtggcttagtcc 31454046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 28442258 - 28442103
Alignment:
Q  115 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 214  Q
    ||||||| ||||||| ||||||||||  ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  28442258 tagctctattatacacgtggtggacaacattaagttgctaactttccagtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtgg 28442159  T
Q  215 cttagtccatttactttactaggaataggttaacgggtg-tttggtggtaagctgt 269  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28442158 cttagtccatttactttattaggaataggttaacgggtgttttggtggtaagctgt 28442103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 256
Target Start/End: Original strand, 28400482 - 28400622
Alignment:
Q  116 agctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggc 215  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||| | |||| ||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  28400482 agctctattaaacaggtggtggataggattaagttgttaactttccagtggatgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggc 28400581  T
Q  216 ttagtccatttactttactaggaataggttaacgggtgttt 256  Q
    |||||||||| |||||||| || ||||| ||| || |||||    
T  28400582 ttagtccattcactttacttggcataggataatggttgttt 28400622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 5411728 - 5411853
Alignment:
Q  118 ctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctt 217  Q
    |||| |||| || ||||||||||||||||||||| ||| |||   ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  5411728 ctctattatgcaagtggtggacaggattaagttgttaaatttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttggctt 5411827  T
Q  218 agtccatttactttactaggaatagg 243  Q
    ||||| |||||||||||| |||||||    
T  5411828 agtccgtttactttactaagaatagg 5411853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 12688172 - 12688286
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| ||||||||||| | |||||||||||||||||||  |||||||||||||||||||   |||||||||||||| |||||||| ||||||||||||||    
T  12688172 ttatgcaggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T
Q  223 atttactttactagg 237  Q
     ||||||||||||||    
T  12688272 gtttactttactagg 12688286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 45718318 - 45718445
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||  |||| ||||||||||||| |||||||||| |||||||   |||| ||||| |||| |||| ||||||||||||||||||||||||||||||    
T  45718318 atagctcaattatgcaggtggtggacaagattaagttgttaactttgaagtggctgaagatgaaatttgccactcttccctttaattatcatggttggtg 45718417  T
Q  214 gcttagtccatttactttactaggaatag 242  Q
    |||||| || |||||||||||||| ||||    
T  45718418 gcttag-ccgtttactttactaggcatag 45718445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 48973645 - 48973757
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||||||||  ||||||||| | |||||   |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  48973645 ttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 48973744  T
Q  223 atttactttacta 235  Q
     ||||| ||||||    
T  48973745 gtttacattacta 48973757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 26260785 - 26260850
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    ||||||||||| ||||||||   |||||||||| ||||||||||| ||||||||||||||||||||    
T  26260785 gtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttac 26260850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 23997109 - 23997211
Alignment:
Q  126 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 225  Q
    ||||||||||||||| ||||||||   | || ||| ||||||||||||||||  | ||  ||||| |||||||||||||||| || ||||||||||| ||    
T  23997109 tacaggtggtggacaagattaagtcagttacctttaggtggttgaaggtgaaactcgtttctctttcctttaattatcatggctgatggcttagtccttt 23997208  T
Q  226 tac 228  Q
    |||    
T  23997209 tac 23997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 52626563 - 52626605
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  52626563 ctcttcccttcaattatcatggttggtggcttagtccatttac 52626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 5958397 - 5958326
Alignment:
Q  157 ttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||| |||||||||||||||| ||||  ||| |||||||||| |||||||| |||||||||| | |||||||    
T  5958397 ttttaggtggttgaaggtgaaatttgctacttttccctttaactatcatggatggtggcttaattcatttac 5958326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 6723811 - 6723717
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||| |||| ||||||||  || ||||||  |||||||||||||||||||   |||| ||| || |||| |||||| ||||||||||||||    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtcc 6723717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 8527072 - 8527118
Alignment:
Q  182 gtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  8527072 gtcaatcttcccttcaattatcatggttggtgacttagtccatttac 8527118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 9484879 - 9484937
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 221  Q
    ||||||||||| ||| |||||  |||||||||| |||||||||||||||||| ||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtc 9484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 16909136 - 16909036
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    |||||||||||||   ||||||  ||||||||   ||||||||||| ||| || |||| |||  || | |||||||||||||||||||||||||| ||||    
T  16909136 caggtggtggacaaagttaagtctctaactttgatgtggttgaaggggaaattcgtcagtctctccctcaattatcatggttggtggcttagtccgttta 16909037  T
Q  228 c 228  Q
    |    
T  16909036 c 16909036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 44675129 - 44675193
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||| ||| ||||   | |||||||| |||||||||||||||||||||||||| ||||    
T  44675129 gtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgttta 44675193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 17128488 - 17128584
Alignment:
Q  132 tggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||| |||| |||||||| | |||||||   |||| |||||| ||| |  |||| ||||||||| ||||| ||| |||||||||||||||| |||||    
T  17128488 tggttgacaagattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccattgttggtggcttagtccttttac 17128584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 34703582 - 34703494
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 216  Q
    |||||||| || | ||||||||  || ||||||  ||||||||||| ||| | ||  |||||||||||||| | |||||||||||||||    
T  34703582 caggtggttgataagattaagtccctcacttttatgtggttgaaggcgaaatatgcaactcttccctttaactttcatggttggtggct 34703494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 126 - 275
Target Start/End: Complemental strand, 11131289 - 11131140
Alignment:
Q  126 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 225  Q
    |||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11131289 tacaggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttt 11131190  T
Q  226 tactttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 275  Q
    ||||||| ||||||||||||||| ||||  ||| | ||||||||| ||||    
T  11131189 tactttattaggaataggttaaccggtggctggagttaagctgttttgtg 11131140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 54870923 - 54870803
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||||||||||||| |||||| ||| | |||||   |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54870923 ttatacaggtggtggacaagattaaattgttgactttcaagtggttaaatgtgaagtttgtaactcttccctttaattatcatggttggtggcttagtcc 54870824  T
Q  223 atttactttactaggaatagg 243  Q
     |||||||||||||| |||||    
T  54870823 gtttactttactaggcatagg 54870803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 10552623 - 10552752
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||| |||| ||||||||||| |||||||||||| |||| ||   ||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  10552623 atagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtg 10552722  T
Q  214 gcttagtccatttactttactaggaatagg 243  Q
    ||||||||| || |||||| |||| |||||    
T  10552723 gcttagtccgttcactttagtaggcatagg 10552752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 18921911 - 18922030
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||||||||||||| ||||||||| |  ||||||||||||||||| ||   ||||||||||||||||||||||||||| |  |||||| || |    
T  18921911 caggtggtggacaggattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggttgactagtcctttca 18922010  T
Q  228 ctttactaggaataggttaa 247  Q
    ||||| |||| |||||||||    
T  18922011 ctttattaggcataggttaa 18922030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 30739619 - 30739500
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || |    
T  30739619 caggtggtggacatgattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttca 30739520  T
Q  228 ctttactaggaataggttaa 247  Q
    ||||| |||| |||||||||    
T  30739519 ctttattaggcataggttaa 30739500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 37207509 - 37207401
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    ||||| || |||| || |||||||| ||||||||||||||||||||    ||||| |||||||||||| | |||||||||||||||||||||||||| ||    
T  37207509 atagcactattattcaagtggtggataggattaagttgctaactttcaattggttaaaggtgaagtttataactcttccctttaattatcatggttgatg 37207410  T
Q  214 gcttagtcc 222  Q
    ||| |||||    
T  37207409 gctaagtcc 37207401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 13137084 - 13137194
Alignment:
Q  133 ggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttacttta 232  Q
    |||||||| |||||||| | ||||||   |||||||||||||||| ||||  ||||||  ||| |||||||||||||||||||||||||| ||||| |||    
T  13137084 ggtggacaagattaagtcgttaacttacaggtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtttacctta 13137183  T
Q  233 ctaggaatagg 243  Q
    ||||| |||||    
T  13137184 ctaggcatagg 13137194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 52578018 - 52578075
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 220  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  52578018 gtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagt 52578075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 40154021 - 40153935
Alignment:
Q  132 tggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctta 218  Q
    ||||||||| |||||||| | ||||||   |||||||||||||||| ||||  | |||||||||||| |||||| ||||||||||||    
T  40154021 tggtggacaagattaagtcggtaacttacaggtggttgaaggtgaaatttgctaatcttccctttaactatcatagttggtggctta 40153935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 9831372 - 9831477
Alignment:
Q  117 gctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 216  Q
    ||||| |||| ||||||||||| | ||| ||||  ||  ||||| |||||||||||| ||| || || || |||||||| ||||||||||| ||||||||    
T  9831372 gctctgttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggct 9831471  T
Q  217 tagtcc 222  Q
    ||||||    
T  9831472 tagtcc 9831477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 12114995 - 12115094
Alignment:
Q  129 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||||| ||| ||||   |||| ||| ||||||||||||||||  | || | ||||||||| ||||||||||||| |||||| ||||| |||||    
T  12114995 aggtggtggacaagatcaagtcagtaacctttaggtggttgaaggtgaaactcgttattcttcccttcaattatcatggtttgtggctcagtccgtttac 12115094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 20510427 - 20510486
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||||| |||  ||| |||||||| |||| |||||||||||||||||||||    
T  20510427 gtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 20510486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 27270046 - 27270009
Alignment:
Q  188 cttccctttaattatcatggttggtggcttagtccatt 225  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27270046 cttcccttcaattatcatggttggtggcttagtccatt 27270009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 53650519 - 53650436
Alignment:
Q  142 gattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 225  Q
    |||||||| ||||||||||  ||||||||||| |||||||   || ||||| || ||||| |||| ||| ||||||||||||||    
T  53650519 gattaagtcgctaacttttatgtggttgaaggcgaagtttactacccttcctttcaattaccatgcttgatggcttagtccatt 53650436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 13608994 - 13608948
Alignment:
Q  182 gtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  13608994 gtcaatcttcccttcaattaccatggttggtggcttagtccgtttac 13608948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 42527441 - 42527335
Alignment:
Q  129 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||| ||||| |||||||||| |||| |    ||||||||||||||| |||   |||||||| |  |||||||||||||||||||||| ||| || ||    
T  42527441 aggtggcggacatgattaagttgttaacctacaagtggttgaaggtgaaattttctactcttccttccaattatcatggttggtggcttaatccgttcac 42527342  T
Q  229 tttacta 235  Q
     ||||||    
T  42527341 attacta 42527335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 21204938 - 21204901
Alignment:
Q  188 cttccctttaattatcatggttggtggcttagtccatt 225  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  21204938 cttcccttcaattatcatggttggtggcttagttcatt 21204901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 25130506 - 25130442
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||| ||| ||||  |||||| || | || ||||||||||||||||||||||| ||||    
T  25130506 gtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgttta 25130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 37772969 - 37773005
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  37772969 ctcttcccttcaattaccatggttggtggcttagtcc 37773005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 131 - 280
Target Start/End: Complemental strand, 7179127 - 7178978
Alignment:
Q  131 gtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttactt 230  Q
    ||||||||||  ||||||||| |||||||   ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||    
T  7179127 gtggtggacataattaagttgttaactttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatgattggtggcttagtccaattactt 7179028  T
Q  231 tactaggaataggttaacgggtgtttggtggtaagctgttctgtgatgct 280  Q
    ||||||||||||| |||  | |||| |||| | ||||||| |||| ||||    
T  7179027 tactaggaataggctaatagttgttcggtgctgagctgttttgtggtgct 7178978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 16489560 - 16489432
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||   |||||  ||||| |||||| | ||||||||||||||||| |    
T  16489560 caggtggtggataggattaagttgttaactttccagtggttgaaggtgaagtttgttcatcttctttttaactatcataggtggtggcttagtccattca 16489461  T
Q  228 ctttactaggaataggttaacgggtgttt 256  Q
    ||||||| || |||||||||||| |||||    
T  16489460 ctttacttggcataggttaacggttgttt 16489432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 38233202 - 38233320
Alignment:
Q  129 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || ||    
T  38233202 aggtggtggacaagattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcac 38233301  T
Q  229 tttactaggaataggttaa 247  Q
    |||| |||| |||||||||    
T  38233302 tttattaggcataggttaa 38233320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 38685759 - 38685868
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||||| ||||||||||||||||| |  ||||| ||||||||||| ||  |||||||||||||| ||||||||||||||| ||||||| || |    
T  38685759 caggtggtggacatgattaagttgctaacttataagtggtcgaaggtgaagtatgctactcttccctttaactatcatggttggtggattagtccgttca 38685858  T
Q  228 ctttactagg 237  Q
    ||||| ||||    
T  38685859 ctttattagg 38685868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 33191313 - 33191195
Alignment:
Q  117 gctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 216  Q
    ||||| |||| || ||||||||||| ||||||||| |||| |    |||||||||| |||| ||||  ||||||||||| ||||||||||||||||||||    
T  33191313 gctctattatgcacgtggtggacag-attaagttgttaacatacacgtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggct 33191215  T
Q  217 tagtccatttactttactag 236  Q
    |||||| || |||| |||||    
T  33191214 tagtccgttcacttaactag 33191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 37929106 - 37929200
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||| || ||||||||||  ||  | ||| |||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  37929106 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 37929200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 41255142 - 41255043
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| |||||||||||  |||||||||| ||||| ||   |||||||||||| || | ||    |||||||||||| |||||||||||||||||||||||    
T  41255142 ttatgcaggtggtggatcggattaagttactaacattcaagtggttgaaggttaactatgcttatcttccctttaactatcatggttggtggcttagtcc 41255043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 8462578 - 8462520
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 221  Q
    ||||||||||| ||| ||||   |||||||||| |||||||||||||||||||||||||    
T  8462578 gtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtc 8462520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 10616938 - 10616995
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 220  Q
    ||||||| ||||||||||||  ||| |||| || || |||||||||||||||||||||    
T  10616938 gtggttggaggtgaagtttgctactattcctttcaactatcatggttggtggcttagt 10616995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 39896308 - 39896243
Alignment:
Q  195 ttaattatcatggttggtggcttagtccatttactttactaggaataggttaacgggtgtttggtg 260  Q
    |||| ||| |||| |||||||||||||| |||||||||||||| ||||| ||| ||  ||||||||    
T  39896308 ttaaatattatgggtggtggcttagtccgtttactttactaggcataggctaaaggcagtttggtg 39896243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 33511756 - 33511784
Alignment:
Q  49 acaaaatagttgtacaaatatcattactc 77  Q
    |||||||||||||||||||||||||||||    
T  33511756 acaaaatagttgtacaaatatcattactc 33511784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 38738477 - 38738525
Alignment:
Q  181 tgtcactcttccctttaattatcatggttggtggcttagtccatttact 229  Q
    ||||| ||||||| | ||||||||||||||||||||||| || ||||||    
T  38738477 tgtcagtcttcccctcaattatcatggttggtggcttagcccgtttact 38738525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 38342952 - 38343076
Alignment:
Q  117 gctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 216  Q
    ||||| |||| || ||||||||||||||||||||| |||||||   |||||||||||||||| |||| |||||||||||||| |||||||||||||| ||    
T  38342952 gctctattatgcaagtggtggacaggattaagttgttaactttcaagtggttgaaggtgaagcttgtaactcttccctttaactatcatggttggtgact 38343051  T
Q  217 tagtccatttactttactaggaata 241  Q
    || ||| ||||||||||||||||||    
T  38343052 taatccgtttactttactaggaata 38343076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 34871558 - 34871693
Alignment:
Q  121 ttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 220  Q
    ||||| |||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||   |||||  ||||| |||||| | ||||||||||||    
T  34871558 ttttagacaggtggtggataggattaagttgttaactttccagtggttgaaggtgaagtttgttcatcttctttttaactatcataggtggtggcttagt 34871657  T
Q  221 ccatttactttactaggaataggttaacgggtgttt 256  Q
    ||||| |||||||| || |||||||||||| |||||    
T  34871658 ccattcactttacttggcataggttaacggttgttt 34871693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 40616848 - 40616719
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||| |||| ||||||||||| |||||||||||| |||  ||   ||||||||||||||||| ||  |||||||||||||| |||| |||||||||    
T  40616848 atagctctattatgcaggtggtggataggattaagttgttaaaattcaagtggttgaaggtgaagtatgctactcttccctttaactatcttggttggtg 40616749  T
Q  214 gcttagtccatttactttactaggaatagg 243  Q
    ||||||||| || ||||||||||| |||||    
T  40616748 gcttagtccgttcactttactaggcatagg 40616719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 27854867 - 27854972
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||| |||| ||||||||||| |||||||||||| |||| ||   ||||||||||||||||| ||  || ||||||||||| ||||||||||||||    
T  27854867 atagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtg 27854966  T
Q  214 gcttag 219  Q
    ||||||    
T  27854967 gcttag 27854972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 11884360 - 11884467
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||   ||||||  ||| || |||||       |||||||||||    
T  11884360 ttatacaggtggtggacaggattaagttgttaacttttaagtggttgaaggtgaagtttccaactcttatcttcaactatca-------tggcttagtcc 11884452  T
Q  223 atttactttactagg 237  Q
    |||||||||||||||    
T  11884453 atttactttactagg 11884467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 8566872 - 8566752
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||| |||||||||||||||||||| |  ||||| ||||||||||||  || |||||| ||||| ||| |||||||| |||| ||||| |||     
T  8566872 caggtggtggataggattaagttgctaactttccattggttaaaggtgaagttttccaatcttccttttaactataatggttggcggctaagtccgtttt 8566773  T
Q  228 ctttactaggaataggttaac 248  Q
    || | ||||| ||||| ||||    
T  8566772 ctattctaggcataggctaac 8566752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 3535817 - 3535880
Alignment:
Q  212 tggcttagtccatttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 275  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||| ||||    
T  3535817 tggcttagtccatttactttactatgaataggttaacaggtggttggtgttaagctgttttgtg 3535880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 41878039 - 41877983
Alignment:
Q  49 acaaaatagttgtacaaatatcattactcaaaa----atatggtctcttgtgctata 101  Q
    |||||||||||||||||||||||||||| ||||    ||||||||||||||||||||    
T  41878039 acaaaatagttgtacaaatatcattacttaaaaaaatatatggtctcttgtgctata 41877983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 38153904 - 38153997
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 221  Q
    |||||||| || ||||||||||  ||  ||||| |||||||||||||||| |||   |||||||||||||| || ||| | |||||||||||||    
T  38153904 caggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtc 38153997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 47543420 - 47543525
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| |||||||| |||| |||||||| |||  |||||  ||||||||||  |||||||    |||||||||| ||||||||||| || |||||||||||    
T  47543420 ttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaattatcatgggtgatggcttagtcc 47543519  T
Q  223 atttac 228  Q
     |||||    
T  47543520 gtttac 47543525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 9628252 - 9628298
Alignment:
Q  182 gtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  9628252 gtcaatcttcccttcaattaccatggttggtggcttagtccgtttac 9628298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 12092710 - 12092776
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttact 229  Q
    ||||||||||| ||| |||  | |||||||||| || |||||||| | |||||||||||||||||||    
T  12092710 gtggttgaaggcgaaattttcctctcttcccttaaactatcatggatagtggcttagtccatttact 12092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 35516750 - 35516792
Alignment:
Q  187 tcttccctttaattatcatggttggtggcttagtccatttact 229  Q
    ||||||||| |||| | ||||||||||||||||||||||||||    
T  35516750 tcttcccttaaatttttatggttggtggcttagtccatttact 35516792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 34237214 - 34237247
Alignment:
Q  189 ttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||| ||||||||||||||||||||||||||    
T  34237214 ttcccttcaattatcatggttggtggcttagtcc 34237247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 40427040 - 40426917
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||  |||| ||||||||||||||||||||||||||||||| |  || |||||| ||||||| ||| |||||||||||||| ||||||||||||||    
T  40427040 atagctcaattatgcaggtggtggacaggattaagttgctaacttgtaagtagttgaaagtgaagtatgttactcttccctttaactatcatggttggtg 40426941  T
Q  214 gcttagtccatttactttactagg 237  Q
    ||||| ||| || |||||||||||    
T  40426940 gcttaatccgttcactttactagg 40426917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 841662 - 841533
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    |||||||| |||| ||||||||||| |||||||||||| |||  ||   ||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  841662 atagctctattatgcaggtggtggataggattaagttgttaatattcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtg 841563  T
Q  214 gcttagtccatttactttactaggaatagg 243  Q
    ||||||||  || ||||||||||| |||||    
T  841562 gcttagtctgttcactttactaggcatagg 841533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 1997797 - 1997678
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || |    
T  1997797 caggtggtggacatgattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttca 1997698  T
Q  228 ctttactaggaataggttaa 247  Q
    ||||| |||| |||||||||    
T  1997697 ctttattaggcataggttaa 1997678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 24739803 - 24739931
Alignment:
Q  115 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 214  Q
    ||||||| |||| ||||||||||| |||||||||||| |||| ||   ||||||||||||||||| ||  || ||||||||||| |||||||||||||||    
T  24739803 tagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtgg 24739902  T
Q  215 cttagtccatttactttactaggaatagg 243  Q
    |||||||| || ||| | ||||| |||||    
T  24739903 cttagtccgttcactattctaggcatagg 24739931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 44736075 - 44735982
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 221  Q
    |||||||| |||| ||||||||  || ||||||  ||||||||||| |||||||   ||||||||||| |||| |||||||| |||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 45131168 - 45131126
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  45131168 ctcttcccttcaattatcatgggtggtggcttagtccatttac 45131126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 8090525 - 8090567
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||| ||||||||||| |||||||||||||| |||||    
T  8090525 ctcttcccttcaattatcatgggtggtggcttagtccgtttac 8090567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 27009255 - 27009297
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||| ||||| |||||||||||||||||||| |||||    
T  27009255 ctcttcccttcaattaccatggttggtggcttagtccgtttac 27009297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 38408989 - 38409086
Alignment:
Q  131 gtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||| |||||||| | ||||||    || |||||||||||| || |  || |||||||| |||||||||||||||||| | ||||| |||||    
T  38408989 gtggtggacaagattaagtcgttaacttacatgtagttgaaggtgaaattcgctacacttcccttcaattatcatggttggtggttcagtccgtttac 38409086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 43621993 - 43622026
Alignment:
Q  51 aaaatagttgtacaaatatcattactcaaaaata 84  Q
    |||||||||||||||||||||||||||| |||||    
T  43621993 aaaatagttgtacaaatatcattactcataaata 43622026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 40638903 - 40638803
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    |||||||| |||| |||||| | ||| || |||  |||||||| | |||||| ||   |||||||||| ||||| ||||| |||||||||||||| ||||    
T  40638903 caggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaattaccatgggtggtggcttagtccgttta 40638804  T
Q  228 c 228  Q
    |    
T  40638803 c 40638803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 21041943 - 21042057
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||||||||  ||||||||| | |||||   ||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  21041943 ttatacaggtggtggacaaaattaagttgttgactttcaagtggttataggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 21042042  T
Q  223 atttactttactagg 237  Q
     ||||| ||||||||    
T  21042043 gtttacattactagg 21042057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 7465223 - 7465341
Alignment:
Q  129 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || ||    
T  7465223 aggtggtggacaagattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcac 7465322  T
Q  229 tttactaggaataggttaa 247  Q
    |||| |||| |||||||||    
T  7465323 tttattaggcataggttaa 7465341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 7961249 - 7961129
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| ||||||||||| ||||||||||||||||| ||   ||||||||||| ||||| ||  |||||||  ||||| ||||||||||||||||||||| |    
T  7961249 ttatgcaggtggtggataggattaagttgctaacattcaagtggttgaaggcgaagtatgctactcttcattttaactatcatggttggtggcttagttc 7961150  T
Q  223 atttactttactaggaatagg 243  Q
     || ||||||||||| |||||    
T  7961149 gttcactttactaggcatagg 7961129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 32018098 - 32017958
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    ||||| || ||||| |||||||||| |||||||||||| |||||||   ||||||||||||| ||| ||  |  ||||||||||||||||||||||||||    
T  32018098 atagccctattatagaggtggtggataggattaagttgttaactttcaagtggttgaaggtgcagtatgctaaccttccctttaattatcatggttggtg 32017999  T
Q  214 gcttagtccatttactttactaggaataggttaacgggtgt 254  Q
    ||||||| ||||  || | ||||| ||||| ||| ||||||    
T  32017998 gcttagttcattctctattctaggcatagggtaatgggtgt 32017958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 16610600 - 16610667
Alignment:
Q  161 cggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    ||||||||||||  |||||||||  |||||||||| ||||||||||| |||||||||||||| |||||    
T  16610600 cggtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttac 16610667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 12831615 - 12831519
Alignment:
Q  126 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||||| || | |||||||| | |  |||||  ||||||||||||||| |||  ||| |||||||| |||| |||||||||||||||||||||    
T  12831615 tacaggtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 12831519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 29994642 - 29994718
Alignment:
Q  153 taacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttact 229  Q
    ||||||||  |||||||||||||||||||     ||||||||| |||||||||||||||||||||| ||| ||||||    
T  29994642 taacttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttact 29994718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 8006827 - 8006874
Alignment:
Q  182 gtcactcttccctttaattatcatggttggtggcttagtccatttact 229  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  8006827 gtcagtcttcccttcaattatcatggttggtggctcagtccatttact 8006874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 12863553 - 12863494
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||||| |||  ||| |||||||| |||| |||||||||||||||||||||    
T  12863553 gtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 12863494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 26778784 - 26778719
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    ||||||||||||||| ||| |  ||||| |||| |||||||||||||||||| ||||||| |||||    
T  26778784 gtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttac 26778719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 27482737 - 27482677
Alignment:
Q  162 ggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||||||||||||||| |  || || |||||||| ||||||||||| ||||||||||||||    
T  27482737 ggtggttgaaggtgaaatacgttacacttcccttcaattatcatggctggtggcttagtcc 27482677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 39839961 - 39839997
Alignment:
Q  186 ctcttccctttaattatcatggttggtggcttagtcc 222  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39839961 ctcttccctttaactatcatggttggtggcttagtcc 39839997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 12564993 - 12564942
Alignment:
Q  128 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagt 179  Q
    ||||||||||||||| ||||| ||||||||| |  |||||||||||||||||    
T  12564993 caggtggtggacaggtttaagctgctaacttataagtggttgaaggtgaagt 12564942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 27843491 - 27843566
Alignment:
Q  153 taacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||| ||| ||||||||||||||||  ||||  |||||| ||| ||||||||||| ||||  ||||||||||||||    
T  27843491 taacctttaggtggttgaaggtgaaacttgtttctcttctcttcaattatcatggctggtaacttagtccatttac 27843566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 32252175 - 32252218
Alignment:
Q  185 actcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||| || |||||||||||||||||||||||||| |||||    
T  32252175 actcttcctttcaattatcatggttggtggcttagtccgtttac 32252218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 25326156 - 25326214
Alignment:
Q  162 ggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 220  Q
    ||||||||||||| || ||||| |||||| |||| ||||| ||| ||||||||||||||    
T  25326156 ggtggttgaaggtaaaatttgttactcttgccttcaattaccatcgttggtggcttagt 25326214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 31706530 - 31706425
Alignment:
Q  123 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 222  Q
    |||| |||||||| |||| |||||||| |||  |||||  |||||| |||| ||||| | |  |||||||| | ||||| ||||| ||||||||||||||    
T  31706530 ttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaattaccatgggtggtggcttagtcc 31706431  T
Q  223 atttac 228  Q
     |||||    
T  31706430 gtttac 31706425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 14716140 - 14716112
Alignment:
Q  50 caaaatagttgtacaaatatcattactca 78  Q
    |||||||||||||||||||||||||||||    
T  14716140 caaaatagttgtacaaatatcattactca 14716112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 18967887 - 18967951
Alignment:
Q  163 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 227  Q
    ||||||||||| ||| ||||   ||||||| |||||| ||||||| || ||||||||||||||||    
T  18967887 gtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccattta 18967951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 6490 - 6619
Alignment:
Q  114 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 213  Q
    ||||| || |||| |||||||| || ||||||||||||||||||||    ||||| ||||||||||||   |||||||||||||| ||||||||||||||    
T  6490 atagcactattattcaggtggtagataggattaagttgctaactttcaattggttaaaggtgaagtttacaactcttccctttaactatcatggttggtg 6589  T
Q  214 gcttagtccatttactttactaggaatagg 243  Q
    ||| ||||| ||| || | ||||| |||||    
T  6590 gctaagtccgtttgctattctaggcatagg 6619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 2158 - 2257
Alignment:
Q  129 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 228  Q
    |||||||||||| ||| |||| | |||| ||| ||||||||||||||||| | |   |||| ||||| |||||||||||||||||||| |||||||||||    
T  2158 aggtggtggacaagatcaagtcggtaacctttaggtggttgaaggtgaagctcgcttctctccccttcaattatcatggttggtggctcagtccatttac 2257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University