View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15724_high_2 (Length: 356)
Name: NF15724_high_2
Description: NF15724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15724_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 8196426 - 8196610
Alignment:
| Q |
10 |
gcaatgagatggacat-catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
108 |
Q |
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| T |
8196426 |
gcaatgagatgg-catacatctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
8196524 |
T |
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| Q |
109 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
194 |
Q |
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| T |
8196525 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8196610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 8201186 - 8201370
Alignment:
| Q |
10 |
gcaatgagatggacat-catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
108 |
Q |
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| T |
8201186 |
gcaatgagatgg-catacatctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
8201284 |
T |
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| Q |
109 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
194 |
Q |
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| T |
8201285 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8201370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 8196682 - 8196843
Alignment:
| Q |
195 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
294 |
Q |
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| T |
8196682 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8196781 |
T |
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| Q |
295 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctgggt |
356 |
Q |
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| T |
8196782 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctgggt |
8196843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 8201442 - 8201603
Alignment:
| Q |
195 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
294 |
Q |
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| T |
8201442 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8201541 |
T |
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| Q |
295 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctgggt |
356 |
Q |
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| T |
8201542 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctgggt |
8201603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 4918121 - 4918040
Alignment:
| Q |
199 |
ttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaa |
280 |
Q |
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| T |
4918121 |
ttccttaatgcaaagttgcaaactttctaatatcaacttttgctccatgctttaattcatatgtttttcatcgacctattaa |
4918040 |
T |
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