View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15724_high_6 (Length: 326)
Name: NF15724_high_6
Description: NF15724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15724_high_6 |
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| [»] scaffold0356 (1 HSPs) |
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| [»] scaffold0075 (1 HSPs) |
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Alignment Details
Target: scaffold0356 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 11261 - 11574
Alignment:
| Q |
11 |
gcaaaggcattcgatgcgttagattggaattttcttcttgcggtgcttcagcggtttagttttgatgaaaaatttgtgcattggattttggtgattttgc |
110 |
Q |
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| T |
11261 |
gcaaaggcattcgatacgttagattggaattttcttcttgcggtgcttcagcggtttggttttgatgaaaaatttgtgcattggattttggtgattttgc |
11360 |
T |
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| Q |
111 |
aatccgctcgtttatcagtattggttaatgggaaggccgttgggttcttttcatgttcgcgtggtgtttgccaaggagacccattgtcaccgcttctttt |
210 |
Q |
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| T |
11361 |
aatccgctcgtttatcagtcttggttaatgggaaagccgttgggttctttacttgttcgcatggtgttcgccaaggagacccattgtcaccgcttctttt |
11460 |
T |
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| Q |
211 |
ttgtctagctgaagaggttcttagtcgggctctttccatggctgcgactgatggacacctcattccattgtcctattgctgtggagtctctttccccact |
310 |
Q |
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| T |
11461 |
ttgtctagttgaagaggttcttagtcgggcgctttccatggctgcgactgacggacaactcattccaatgtcctattgtcgtggagtatctttccccact |
11560 |
T |
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| Q |
311 |
catattttatacgc |
324 |
Q |
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| T |
11561 |
catattttatacgc |
11574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 19739578 - 19739888
Alignment:
| Q |
14 |
aaggcattcgatgcgttagattggaattttcttcttgcggtgcttcagcggtttagttttgatgaaaaatttgtgcattggattttggtgattttgcaat |
113 |
Q |
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| T |
19739578 |
aaggctttcgataccttagattggaatttccttattttggttcttcggcggtttggttttcatgaaaaaattgtgcattggatcttggtgattttgaaat |
19739677 |
T |
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| Q |
114 |
ccgctcgtttatcagtattggttaatgggaaggccgttgggttcttttcatgttcgcgtggtgtttgccaaggagacccattgtcaccgcttcttttttg |
213 |
Q |
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| T |
19739678 |
cagcccgtttatcagtgttggttaatgggaaagctgttgggtttttttcttgctcgggtggggttcgacaaggacacccattgtcccctcttctcttctg |
19739777 |
T |
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| Q |
214 |
tctagctgaagaggttcttagtcgggctctttccatggctgcgactgatggacacctcattccattgtcctattgctgtggagtctctttccccactcat |
313 |
Q |
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| T |
19739778 |
tctggctgaagaggttcttagtcgggcactctccattgcttcaactttcggacgactcacaccaatgtcttattgtcgtggggtctctcttcccactcag |
19739877 |
T |
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| Q |
314 |
attttatacgc |
324 |
Q |
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| T |
19739878 |
attttatacgc |
19739888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 48800 - 48730
Alignment:
| Q |
171 |
gtggtgtttgccaaggagacccattgtcaccgcttcttttttgtctagctgaagaggttcttagtcgggct |
241 |
Q |
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| T |
48800 |
gtggtgttcgacaaggggaccccttgtccccccttcttttctgtctagctgaagaggtgctaagccgggct |
48730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 15144264 - 15144206
Alignment:
| Q |
170 |
cgtggtgtttgccaaggagacccattgtcaccgcttcttttttgtctagctgaagaggt |
228 |
Q |
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| T |
15144264 |
cgtggtgttcgacaaggggaccccttgtccccccttcttttctgtctagctgaagaggt |
15144206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 9077 - 9007
Alignment:
| Q |
171 |
gtggtgtttgccaaggagacccattgtcaccgcttcttttttgtctagctgaagaggttcttagtcgggct |
241 |
Q |
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| T |
9077 |
gtggtgttcgacaaggggaccccttgtccccccttcttttctgtctagctgaagaggtgctaagccgggct |
9007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 8636245 - 8636213
Alignment:
| Q |
203 |
cttcttttttgtctagctgaagaggttcttagt |
235 |
Q |
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| T |
8636245 |
cttcttttttgtttagctgaagaggttcttagt |
8636213 |
T |
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