View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15724_low_6 (Length: 244)
Name: NF15724_low_6
Description: NF15724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15724_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 42277855 - 42277640
Alignment:
| Q |
21 |
aagataggatccaacagtaacacatgcctatctgagatatcatttggcagcttctcatatattagctgctcgataatcaagggataagttagacattgtg |
120 |
Q |
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| T |
42277855 |
aagataggatccaacagtaacacatgcctatctgagatatcatttggcagcttctcatatattagctgctcgataatcaagggataagttagacattgtg |
42277756 |
T |
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| Q |
121 |
aaatgaaagaaacagaaatacatactcaattctcacgcatgcatgcagacgacaaacctgctgaccactgtcaccttctctatgaataagaattttacca |
220 |
Q |
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| T |
42277755 |
aaatggaagaaacagaaatacatactcaattctcacgcatgcatgcagacgacaaacctgctgaccattgtcaccttctctatgaataagaattttacca |
42277656 |
T |
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| Q |
221 |
atcttgatacctttgc |
236 |
Q |
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| T |
42277655 |
atcttgatacctttgc |
42277640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 24236279 - 24236215
Alignment:
| Q |
23 |
gataggatccaacagtaacacatgcctatctgagatatcatttggcagcttctcatatattagct |
87 |
Q |
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|||||| |||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |
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| T |
24236279 |
gatagggtccaacagtaacacgtgcctttctgagatatcgtttggcaacttctcatatattagct |
24236215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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