View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15724_low_7 (Length: 237)
Name: NF15724_low_7
Description: NF15724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15724_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4863782 - 4863574
Alignment:
| Q |
18 |
caagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttc |
117 |
Q |
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| T |
4863782 |
caagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttc |
4863683 |
T |
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| Q |
118 |
tttggactgaatccaaaaccctttatcctatctcccacagaacaaggtttaccaactgagcagtcgaagaaatcaaccatagttatcgtcgttgttgttg |
217 |
Q |
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| T |
4863682 |
tttggactgaatccaaaaccctttattctatctcccacagaacaaggtttaccaactgagcagtcgaagaaatcaaccatagttatcgtcgttgttgttg |
4863583 |
T |
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| Q |
218 |
tagtttcat |
226 |
Q |
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||||||||| |
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| T |
4863582 |
tagtttcat |
4863574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 4784110 - 4784187
Alignment:
| Q |
58 |
cgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
138 |
Q |
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| T |
4784110 |
cgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaa---aataatctctttggagtgaatccaaaaccc |
4784187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 4816539 - 4816616
Alignment:
| Q |
58 |
cgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
138 |
Q |
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| T |
4816539 |
cgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaa---aataatctctttggagtgaatccaaaaccc |
4816616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 4697456 - 4697543
Alignment:
| Q |
49 |
acaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaac |
136 |
Q |
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| T |
4697456 |
acaagatacggtgatgtcacattgaatggcatcgagattttgaaaataaatgataaaaatgataatctctttggatcaaatccaaaac |
4697543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 4672505 - 4672440
Alignment:
| Q |
49 |
acaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataat |
114 |
Q |
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| T |
4672505 |
acaaaagacagtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataataat |
4672440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 4712341 - 4712403
Alignment:
| Q |
49 |
acaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataat |
111 |
Q |
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| T |
4712341 |
acaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataat |
4712403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 4643494 - 4643454
Alignment:
| Q |
70 |
ttgaatggaatcgagatttttaaaataagcgataaaaataa |
110 |
Q |
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| T |
4643494 |
ttgaatggaatcgagattttaaaaataagtgacaaaaataa |
4643454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 18926009 - 18926069
Alignment:
| Q |
50 |
caaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataa |
110 |
Q |
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| T |
18926009 |
caaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa |
18926069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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