View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15725_high_15 (Length: 214)
Name: NF15725_high_15
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15725_high_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 40578073 - 40578290
Alignment:
| Q |
1 |
caacgcctgaaaaatccatcacaaattattaatcattaacacaaaaatatc----agacnnnnnnnnnnggtaaataaaagcaaaactctttacctggaa |
96 |
Q |
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| T |
40578073 |
caacccctgaaaaatccatcacaaattattaatcattaacacaaaaatatcggaaagaaaaaaaaaaaaggtaaataaaagcaaaactctttacctggaa |
40578172 |
T |
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| Q |
97 |
aacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagcacaatttctggcggtgtaacttccttagattcctccgg |
196 |
Q |
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| T |
40578173 |
aacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagcacaatttctcgcggtgtaacttccttagattcctccgg |
40578272 |
T |
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| Q |
197 |
ttttttctcttcttctgt |
214 |
Q |
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| T |
40578273 |
ttttttctcttcttctgt |
40578290 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 45386659 - 45386718
Alignment:
| Q |
89 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaa |
148 |
Q |
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| T |
45386659 |
acctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgcatgaa |
45386718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 45391028 - 45391107
Alignment:
| Q |
89 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagcacaatttctg |
168 |
Q |
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| T |
45391028 |
acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctg |
45391107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 734636 - 734715
Alignment:
| Q |
89 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagcacaatttctg |
168 |
Q |
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| T |
734636 |
acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctg |
734715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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