View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15725_high_4 (Length: 305)
Name: NF15725_high_4
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15725_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 40140752 - 40140548
Alignment:
| Q |
20 |
gacttgtcataaactttattgtttgttaagaataagatacatacatgtccacatttgagttggatttaattcaagctcacaagatttctgattatgaaca |
119 |
Q |
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| T |
40140752 |
gacttgtcataaactttattgtttgttaagaataagatacatacatgtccacatttgagttggatttaattcaagctcacaagatttctgattatgaaca |
40140653 |
T |
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| Q |
120 |
cttaatcgaactatatcacatccaatgacaagtctctcaacgaacacctttggtcgattgagattacaagatcaaagttttaccactgagcagacttctt |
219 |
Q |
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| T |
40140652 |
cttaatcgaactatatcacatccaatgacaagtctctcaacaaacacctttggtcaattgagattacaagatcaaagttttaccactgagcagacttctt |
40140553 |
T |
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| Q |
220 |
gttga |
224 |
Q |
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||||| |
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| T |
40140552 |
gttga |
40140548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 40140539 - 40140493
Alignment:
| Q |
256 |
tacatatacattggaaactgatgatttgtttttgtttatttcttcat |
302 |
Q |
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| T |
40140539 |
tacatatacattggaaactgatgatttgtttttgtttctttcttcat |
40140493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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