View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15725_low_1 (Length: 859)
Name: NF15725_low_1
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15725_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 230 - 575
Target Start/End: Complemental strand, 44622535 - 44622184
Alignment:
| Q |
230 |
cgtgagacatggcaattataagagtctggtgcctgaaggaatttaatttcgggttcattaaggatttttggattgatttaaaagatgatatattatgcag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44622535 |
cgtgagacatggcaattataagagtctggtgcctgaaggaatttaatttctggttcattaaggatttttggattgatttaaaagatgatatattatgcat |
44622436 |
T |
|
| Q |
330 |
tgtttattagaatttcattggaaggaagagcaaaagaaaggaattaatagtatctacatcgctttcaacgggtagcgaattttcgcccaatagctgtggt |
429 |
Q |
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| T |
44622435 |
tttttattagaatttcattggaatgaagagctaacgaaaggaattaatagtatttttatcgctttcaacggttagctaattttcgccctatatctttggt |
44622336 |
T |
|
| Q |
430 |
gggctgcttgtataaggtattgtttaaggtgttaagaaaccgagtgagaagtatgatgggcaatataatctcataatcttagtcaacctttatttaagag |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44622335 |
gggctgcttgtataaggtattgtttaaggtgttaagaaaccgattgagaagtatgatgggcaatataatctcataatcttagtcaacctttattcaagag |
44622236 |
T |
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| Q |
530 |
agacaaattcttgatgg------aatagaaaatgagttggtggatgatgctc |
575 |
Q |
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| T |
44622235 |
agacaaattcttgatggaattctaatagaaaatgagttggtggatgatgctc |
44622184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 626 - 841
Target Start/End: Complemental strand, 44619015 - 44618800
Alignment:
| Q |
626 |
tttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaactctttggtgaaaatggatcatggaatgcttgaccactgctt |
725 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44619015 |
tttgacttagtcgatcagaggtacctacatgttgtaatgattaaaatgaactttccaactctttggtgaaaatggatcatggaatgcttgaccgctgctt |
44618916 |
T |
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| Q |
726 |
ctgcgtctgttctagtgaatgggtgcccaatcaacgagttcaaatttgaaagagggttacgacaaggtgaccctattttgccttttctctttttcatggt |
825 |
Q |
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| T |
44618915 |
ctgcgtctgttctagtgaatgggtgcccaatcaacgagttcaaatttgaaagagggttatgacaaggtgaccctattttgccttttctctttttcatggt |
44618816 |
T |
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| Q |
826 |
tgctgaaggccttaat |
841 |
Q |
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|||||||||||||||| |
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| T |
44618815 |
tgctgaaggccttaat |
44618800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 44622741 - 44622600
Alignment:
| Q |
24 |
gcgaatcaaatcaaatttatatcaaatttaaaaaccaagctaattttactgaaac-gttttatttgatttgaaaatatagtttactcgcattatatattt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44622741 |
gcgaatcaaatcaaatttatatcaaatttaaaaaccaagctaattttactgaaacagttttatttgatttgaaaatatagtttactcacattatatattt |
44622642 |
T |
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| Q |
123 |
tcaaaccaaatctagaatccggatatttcgtgaatataacaa |
164 |
Q |
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| T |
44622641 |
tcaaaccaaatctacaatccggatatttcgtgaatataacaa |
44622600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 44619901 - 44619849
Alignment:
| Q |
577 |
acgatacaaaaaagagttattattatttaaagttgattttgaaatggattttg |
629 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44619901 |
acgatacaaaaaagagttattattatttaaagttgattttgaaatggattttg |
44619849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 584 - 841
Target Start/End: Complemental strand, 39435803 - 39435546
Alignment:
| Q |
584 |
aaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaa |
683 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||| || | ||| | | | ||| |||||| || |||| |||||| |||||||||| ||||||| |
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| T |
39435803 |
aaaaaagagttgttattatttaaagttaattttgaaaaggcatatgattcaatagattagaggtatcttgatgtcgtaatggttaaaatgaaatttccaa |
39435704 |
T |
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| Q |
684 |
ctctttggtgaaaatggatcatggaatgcttgaccactgcttctgcgtctgttctagtgaatgggtgcccaatcaacgagttcaaatttgaaagagggtt |
783 |
Q |
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|| | ||| |||||||||| ||||||||| | | ||| |||| | || |||| |||||| || |||||| |||||||| ||||||||||||||||| |
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| T |
39435703 |
ctttgtggcgaaaatggattatggaatgcattagtactacttcagtatcaattcttgtgaataggagcccaactaacgagtttaaatttgaaagagggtt |
39435604 |
T |
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| Q |
784 |
acgacaaggtgaccctattttgccttttctctttttcatggttgctgaaggccttaat |
841 |
Q |
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| || |||| ||||| |||| ||||| ||||||| || ||| ||||||||||||| |
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| T |
39435603 |
aagataaggagacccacatttggcttttatctttttgatagttattgaaggccttaat |
39435546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 685
Target Start/End: Original strand, 23634822 - 23634923
Alignment:
| Q |
584 |
aaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaa |
683 |
Q |
| |
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||||||||| | ||||||||||||||||| ||||| | || |||||| | |||||| || | || || |||||||||||| ||||||||| ||||||| |
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| T |
23634822 |
aaaaaagagatgttattatttaaagttgaatttgagaaggcttttgattcggtcgattggtgatatcttgatgttgtaatgactaaaatgaattttccaa |
23634921 |
T |
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| Q |
684 |
ct |
685 |
Q |
| |
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|| |
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| T |
23634922 |
ct |
23634923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 34977837 - 34977769
Alignment:
| Q |
248 |
taagagtctggtgcctgaaggaatttaatttcgggttcattaaggatttttggattgatttaaaagatga |
317 |
Q |
| |
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| T |
34977837 |
taagagtctggggcctgacggaatt-aattttggtttcatcaaggatttttggctcgatttaaaggatga |
34977769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 711
Target Start/End: Complemental strand, 7115571 - 7115421
Alignment:
| Q |
561 |
tggtggatgatgctc-aacgatacaaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttg |
659 |
Q |
| |
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||||||||||||||| || |||| ||||||||||| |||||||||||| | |||| || | || |||||||| |||||| ||| |||||| | || |
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| T |
7115571 |
tggtggatgatgctcgaaagata-aaaaaagagttgttattatttaaattcaatttggagaaggcttttgactctgtcgattggaagtacctggaaactg |
7115473 |
T |
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| Q |
660 |
taatgattaaaatgaactttccaactctttggtgaaaatggatcatggaatg |
711 |
Q |
| |
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||||| | |||||||| ||||| ||| | ||| |||||||||||||||||| |
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| T |
7115472 |
taatgttcaaaatgaattttcctactttatggcaaaaatggatcatggaatg |
7115421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 636
Target Start/End: Complemental strand, 24534975 - 24534932
Alignment:
| Q |
593 |
ttattattatttaaagttgattttgaaatggattttgacttagt |
636 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
24534975 |
ttattattatttaaagttgactttgaaaaggattttgagttagt |
24534932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 668 - 702
Target Start/End: Original strand, 14083329 - 14083363
Alignment:
| Q |
668 |
aaaatgaactttccaactctttggtgaaaatggat |
702 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
14083329 |
aaaatgaactttccaactctttggagaaaatggat |
14083363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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