View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15725_low_13 (Length: 284)

Name: NF15725_low_13
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15725_low_13
NF15725_low_13
[»] chr8 (4 HSPs)
chr8 (21-103)||(30854366-30854448)
chr8 (181-224)||(30854245-30854288)
chr8 (21-85)||(30878581-30878647)
chr8 (237-268)||(30854191-30854222)
[»] chr6 (1 HSPs)
chr6 (21-97)||(15064233-15064309)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 30854448 - 30854366
Alignment:
Q  21 catgcatggacaaattaagctggaatctttagacagctagctttagtctatcaccataatatgtgtcttgtcattttgtaaac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30854448 catgcatggacaaattaagctggaatctttagacagctagctttagtctatcaccataatatgtgtcttgtcattttgtaaac 30854366  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 30854288 - 30854245
Alignment:
Q  181 catgttgtgtcttgcaagttttcctccttaatattttgttcaat 224  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  30854288 catgttgtgccttgcaagttttcctccttaatattttgttcaat 30854245  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 30878647 - 30878581
Alignment:
Q  21 catgcatggacaaattaagctggaatct--ttagacagctagctttagtctatcaccataatatgtg 85  Q
    ||||||||||||||||||||| ||||||  ||||| |||||||| |||| |||||||||||||||||    
T  30878647 catgcatggacaaattaagctagaatctctttagatagctagctctagtttatcaccataatatgtg 30878581  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 30854222 - 30854191
Alignment:
Q  237 tctcagtcaaatgttgagttcagctacattgt 268  Q
    ||||||||||||||||||||||||||||||||    
T  30854222 tctcagtcaaatgttgagttcagctacattgt 30854191  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 15064233 - 15064309
Alignment:
Q  21 catgcatggacaaattaagctggaatctttagacagctagctttagtctatcaccataatatgtgtcttgtcatttt 97  Q
    ||||||||||||||||||||| |||||| |  ||| |||||| |||| |||| ||||||||||||||||||||||||    
T  15064233 catgcatggacaaattaagctagaatctctcaacaactagctctagtatatctccataatatgtgtcttgtcatttt 15064309  T

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